Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19k07
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    28   1.3  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    26   5.3  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    25   9.3  

>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 533 LLSVAADHAVCFWRGNV*GWRRADEFERHVGT 628
           L+S + D+++CFWR +   W    + + H  T
Sbjct: 438 LVSGSYDNSICFWRDDGDDWALTCQLQGHTNT 469


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 465 CRVNEMPRLKYASVVRVVVILGLFCLWLQI 554
           C V ++P+L   S  R + IL +FCL  Q+
Sbjct: 336 CSVEDLPKLVQLSPKRDLYILRVFCLAEQL 365


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 193 KSNTTRIFFIKHYFLQ*SEFFRTCCCEMARLFRSSIQSHDANSAN 59
           KS   +  FI  YFLQ +      CC +  L   +I S D +SAN
Sbjct: 648 KSGFEQNEFINPYFLQTNYLKNLLCCCITNLVSLAILSKD-HSAN 691


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,027
Number of Sequences: 5004
Number of extensions: 44905
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)