Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19k07
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z75533-3|CAA99822.1|  868|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF016688-6|AAB66074.2|  274|Caenorhabditis elegans Hypothetical ...    29   3.7  

>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
           protein F41H10.3b protein.
          Length = 1005

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 553 ICSHRQKSPSMTTTRTTEAYLSRGISFT 470
           +CS +Q+S S+  T  TE    RG++FT
Sbjct: 46  VCSSKQRSKSLKNTFQTEVRALRGLNFT 73


>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
           protein F41H10.3a protein.
          Length = 1140

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 553 ICSHRQKSPSMTTTRTTEAYLSRGISFT 470
           +CS +Q+S S+  T  TE    RG++FT
Sbjct: 46  VCSSKQRSKSLKNTFQTEVRALRGLNFT 73


>Z75533-3|CAA99822.1|  868|Caenorhabditis elegans Hypothetical
           protein C54G4.4 protein.
          Length = 868

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 420 WRCTELWHLFNSPTPCFR 367
           + C+  WHL NSP+P +R
Sbjct: 565 YECSNGWHLANSPSPSYR 582


>AF016688-6|AAB66074.2|  274|Caenorhabditis elegans Hypothetical
           protein F18A12.2 protein.
          Length = 274

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 590 IPIHSPARSRQHD-LQPQTEEPEYDDNTHDRSILEPW 483
           IP  SP  S+Q +   P+ EEP  +    D++I  PW
Sbjct: 127 IPQGSPEASQQREPTPPKPEEPPNEPTWLDKTIYHPW 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,243,553
Number of Sequences: 27780
Number of extensions: 251083
Number of successful extensions: 634
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)