Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19k05
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.5  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 612 NNKTLCECRQQ 644
           NNKTLC+C  Q
Sbjct: 666 NNKTLCKCDAQ 676


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = +3

Query: 93  ITMTSLNEQIEHPSFFWNCLALQDDCPFYSSID 191
           + +  L+E++      +NC +L    PF+++ D
Sbjct: 429 LILGELSEKLREDVINYNCRSLVASVPFFANAD 461


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = +3

Query: 93  ITMTSLNEQIEHPSFFWNCLALQDDCPFYSSID 191
           + +  L+E++      +NC +L    PF+++ D
Sbjct: 397 LILGELSEKLREDVINYNCRSLVASVPFFANAD 429


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 599 FPRKASSSYNNGLNVLKFNGMLAA 528
           FPR      NN L+  K+N  ++A
Sbjct: 367 FPRNIDEYNNNDLDTKKWNNKISA 390


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,867
Number of Sequences: 438
Number of extensions: 3701
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)