Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19k04
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 27 2.1
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|... 27 3.7
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 27 3.7
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 26 4.8
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 4.8
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.5
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom... 25 8.5
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 25 8.5
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 25 8.5
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c... 25 8.5
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 27.5 bits (58), Expect = 2.1
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = +2
Query: 308 LWRIPIFLWATISLFMSMNY--FWGPTKLFFVYMTHWGLLFIVLESMFGIIVVLRKRGRP 481
LW ++LW T+S + NY P +V W + F++L + +L +G P
Sbjct: 1080 LWLSFLWLWGTLSSRLDYNYKVLLQPINSVYVVAGVWPVSFVLLS-----VCILLYKGLP 1134
Query: 482 DATFGLPWYVKTY-WVLYNISIPVAFLITVFYWGILKSSL 598
P + + L + + + FLI+V S+L
Sbjct: 1135 PFYRQKPGSIPAFSKSLLHRKVVICFLISVINQNFWMSTL 1174
>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 303
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 500 PWYVKTYWVLYNISIPVAFLITVFYWGILKSSLDTVKFSPNPVLDVMI 643
P + ++VL N A+ T++YW SS+ F+ PVL+ ++
Sbjct: 135 PASAEKHFVLGNEKSARAYGETMYYWFTSDSSISPDTFAGRPVLNYLL 182
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 341 WLPTRILVSSITKGKCFPSW 282
WL ILVS + + K FP W
Sbjct: 622 WLDLNILVSLLNRAKEFPKW 641
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 26.2 bits (55), Expect = 4.8
Identities = 23/63 (36%), Positives = 31/63 (49%)
Frame = +2
Query: 215 HGLYCISAFLGSEDESVEIFTKSSLGSISPLLWRIPIFLWATISLFMSMNYFWGPTKLFF 394
+G+Y SA G V+IF + LG+I PL SLF +NY WG T L F
Sbjct: 411 YGIYSASASAG-----VKIF-QLLLGAIFPLFAE---------SLFRRLNYGWGCTLLAF 455
Query: 395 VYM 403
+ +
Sbjct: 456 ILL 458
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 26.2 bits (55), Expect = 4.8
Identities = 23/63 (36%), Positives = 31/63 (49%)
Frame = +2
Query: 215 HGLYCISAFLGSEDESVEIFTKSSLGSISPLLWRIPIFLWATISLFMSMNYFWGPTKLFF 394
+G+Y SA G V+IF + LG+I PL SLF +NY WG T L F
Sbjct: 411 YGIYSASASAG-----VKIF-QLLLGAIFPLFAE---------SLFRRLNYGWGCTLLAF 455
Query: 395 VYM 403
+ +
Sbjct: 456 ILL 458
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 344 SLFMSMNYFWGPTKLFFVYM 403
SLF +NY WG T L F+ +
Sbjct: 439 SLFRRLNYGWGCTLLAFILL 458
>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 548 VAFLITVFYWGILKSSLDTVKFSPNP 625
+ FL +FY I S+LD+VK P+P
Sbjct: 86 ITFLNPLFYGEIDLSNLDSVKSLPHP 111
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 8.5
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Frame = -1
Query: 525 TQYVFTYQGKPNVASGLPRFLSTTM-------IPNIDSR--TMN-NRPQCVIYTKNSFVG 376
+Q + ++Q +PN S PRF ST IP D+ T+N N+P T V
Sbjct: 373 SQSMRSFQPQPNTGSPFPRFTSTNTEDEQESDIPQSDANDSTVNLNQPNYANLTPTPQVS 432
Query: 375 PQK 367
P++
Sbjct: 433 PKR 435
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = -2
Query: 671 EHYNGVPRRESLRPAQDSVRTSLCPMMILIFPNRTQ**ERRPGLKYC 531
+H+ + ++ PA DS +T+ ++++ FP++ E+ P L C
Sbjct: 256 QHFRELLLESTIPPATDSAKTTDASLVMMGFPSKVV--EQLPSLCAC 300
>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 683
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +1
Query: 451 HRSTKETRKTRRYIW---LALVCKNVLGPLQYFNPGRLSHYCVLLGNIKI 591
H+S E + R+ + + + +LG L+Y + R+ H + LGNI +
Sbjct: 122 HKSLMELLRKRKQLTEPEVRYLMMQILGALKYMHKKRVIHRDLKLGNIML 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,144,278
Number of Sequences: 5004
Number of extensions: 69902
Number of successful extensions: 192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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