Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19k04
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0202 - 6770448-6770561,6771185-6771279,6771638-6771686,677...    33   0.24 
03_06_0605 + 35024493-35025152,35025425-35025710,35026249-35026262     31   0.72 
11_01_0032 - 249808-250788                                             31   1.3  
12_01_0031 - 264610-265986                                             29   3.8  
08_02_0871 - 22075553-22075731,22075815-22076028,22076309-220763...    29   5.1  
07_01_1101 + 10122804-10123758,10123872-10123910,10124072-101242...    28   6.7  

>10_02_0202 -
           6770448-6770561,6771185-6771279,6771638-6771686,
           6771795-6771843,6772035-6772228
          Length = 166

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +2

Query: 359 MNYFWGPTKLFFVYMTHWGLLFIVLESMFGIIVVLRKRGRPDATFGLP-WYVKTYWVLYN 535
           +NY  GP  LFF Y T   L+     + FG IV+    G P    G+  W   TYW L  
Sbjct: 26  LNYL-GPAYLFFYYCTQCFLIGGAFLNAFGAIVL----GAP---IGIKYWAATTYWSLLM 77

Query: 536 ISIPVAFLITVFYWGILKSSLDTVKFSP 619
               V   ++  +  I  +++D +  +P
Sbjct: 78  SLFTVVLNVSAIWTAIFGAAMDYMISAP 105


>03_06_0605 + 35024493-35025152,35025425-35025710,35026249-35026262
          Length = 319

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +2

Query: 281 SSLGSISPLLWRIPIFLWATISLFMSMNYFWGPTKLFFVYMTHWGLL 421
           S LG +S L W I + LW T S  +     WG   LF     HWG++
Sbjct: 157 SLLGRMSFLAWMIFVPLWLTFSYTVGAFSLWGGGFLF-----HWGVI 198


>11_01_0032 - 249808-250788
          Length = 326

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 25/89 (28%), Positives = 37/89 (41%)
 Frame = +2

Query: 260 SVEIFTKSSLGSISPLLWRIPIFLWATISLFMSMNYFWGPTKLFFVYMTHWGLLFIVLES 439
           +V +   + LG +S   W   + LW T+S  +     WG   LF     HWG    V++ 
Sbjct: 136 TVGLVAGAVLGRMSVKAWMAFVPLWTTLSYTVGAYSIWGGGFLF-----HWG----VMDY 186

Query: 440 MFGIIVVLRKRGRPDATFGLPWYVKTYWV 526
             G +V+L          G+  Y   YWV
Sbjct: 187 SGGYVVLL--------AAGVSGYTAAYWV 207


>12_01_0031 - 264610-265986
          Length = 458

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +2

Query: 260 SVEIFTKSSLGSISPLLWRIPIFLWATISLFMSMNYFWGPTKLFFVYMTHWGLL 421
           +V +   + LG +S   W   + LW T+S  +     WG   LF     HWG++
Sbjct: 136 TVGLVAGAVLGRMSVKAWMAFVPLWTTLSYTVGAYSIWGGGFLF-----HWGVM 184


>08_02_0871 -
           22075553-22075731,22075815-22076028,22076309-22076351,
           22076557-22076616,22077522-22077593,22078163-22078368,
           22078782-22078837,22079540-22079777,22079908-22080081,
           22080157-22080292,22080822-22080853,22081563-22081619,
           22081713-22081965,22082057-22082145,22082590-22082643,
           22084016-22084207,22085338-22085499
          Length = 738

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 228 ASRHFWDRKMNPSRSLRNPAWEAFPLCYGGYQYSC 332
           A+ HF    ++  RS  + AW+AF L Y  ++  C
Sbjct: 152 AASHFRHSLLSVVRSSCSHAWDAFQLAYASFEQYC 186


>07_01_1101 +
           10122804-10123758,10123872-10123910,10124072-10124251,
           10124841-10124951,10125448-10125560
          Length = 465

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -1

Query: 378 GPQK*FIDMKSEMVAHKNIGILHNKGEMLPKLDFVKISTDSSSDPRNAEMQYN 220
           GP+K ++ MK+   A +    L NKG M      VKI  DS ++  N + + N
Sbjct: 360 GPRKGYLVMKTYKKAQEYYRELRNKGAMASGAG-VKIEDDSETESDNEDEKAN 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,976,011
Number of Sequences: 37544
Number of extensions: 439075
Number of successful extensions: 1003
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)