Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19k04
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   3.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   3.9  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   5.2  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -3

Query: 301 GNASQAGFRKDLDGFIFRSQKCR-DAVQSV 215
           GNA      KD+DGF+      + D VQ V
Sbjct: 214 GNAKDLAKEKDIDGFLVGGASLKPDFVQIV 243


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = +2

Query: 386 LFFVYMTHWGLLFIVLESMFGIIVVLRKRGR 478
           LF + M +W  L +++ +   I++ +R+R +
Sbjct: 206 LFGMIMMYWFPLVVIIYTYTSILLEIRRRSK 236


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 218 GLYCISAFLGSEDESVEIFTKSSLGSISPLLW 313
           GL+ +   L + D SV I +K  L + + L W
Sbjct: 11  GLFGVLLLLTNADNSVHILSKYQLITSTTLNW 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,314
Number of Sequences: 438
Number of extensions: 4894
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)