Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19k03
         (245 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb...    26   0.80 
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch...    25   1.8  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    24   2.4  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    23   5.6  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    23   5.6  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    23   5.6  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    23   5.6  
SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma...    23   5.6  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    23   7.4  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    23   7.4  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    23   7.4  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    22   9.8  
SPCC757.03c |||ThiJ domain protein|Schizosaccharomyces pombe|chr...    22   9.8  
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...    22   9.8  
SPAC4G9.06c |||histone chaperone Chz1 |Schizosaccharomyces pombe...    22   9.8  

>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 281

 Score = 25.8 bits (54), Expect = 0.80
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 50  SLXVYFCDICILMLVGINYFXLAEVV 127
           SL  +FC +C++  +G  +  LAE +
Sbjct: 89  SLITFFCKLCVIFGLGFVFTYLAEQI 114


>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 201 SGVTVGNPPQEQLPFRSSNGAILTGTTSASXK 106
           +G T  +PP   + F   +G I+TG    S K
Sbjct: 199 AGATFIDPPNPNVNFTQIDGKIVTGVNPQSAK 230


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 157 EXQLLLRRISDCDAXSWKS 213
           E +LL+  ISD D   WKS
Sbjct: 660 ELELLIGGISDVDVEDWKS 678


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 30  KTNIXWAPXGYIFATFAFSCWSGLIIF 110
           K+ + W    YI A   F+ ++ +IIF
Sbjct: 224 KSYLGWRWTSYITAIMGFTAFTSMIIF 250


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 197 PDPGSLPLLSQ 229
           PDP SLP+LS+
Sbjct: 36  PDPNSLPILSE 46


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 182 FPTVTPDPGSLPLLSQTPS 238
           FP   P P S PL S TP+
Sbjct: 182 FPYKMPSPNSQPLQSITPN 200


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 24  TLKTNIXWAPXGYIFAT 74
           TL   + W P GYIF T
Sbjct: 216 TLLRFLNWIPLGYIFET 232


>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 125 VPVSIAPFEDRXGNCSCGGFPTVTPD 202
           VP+ I PF+       CG  P  T D
Sbjct: 104 VPLEINPFKSWAKLVDCGDIPVTTYD 129


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = -3

Query: 159 FRSSNGAILTGTTSASXK*LIPTNMRMQMSQKYTXK 52
           F+  NG   TG+TS +       + +  + +KY+ +
Sbjct: 104 FQGENGEAKTGSTSLTRSASATVSRKSSLQEKYSTR 139


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 143 PFEDRXGNCSCGGFPTVTPDPGSLPLLS 226
           PF+      SC G P   PD   L +LS
Sbjct: 813 PFQTYFAAKSCLGVPYTHPDGAPLQILS 840


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = -3

Query: 189 VGNPPQEQLPFRSSNGAILTGTTSASXK*LIPTNMRMQMSQKYT 58
           + +PP    P   S   + + T+S + + L+P N  + +    T
Sbjct: 192 LSSPPVPTTPDEVSTNRLSSSTSSMNCRNLVPDNFNISIRPNTT 235


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 157 PVFEWGDTNXYNF 119
           PVF WG  N Y F
Sbjct: 446 PVFGWGPPNGYVF 458


>SPCC757.03c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = -3

Query: 201 SGVTVGNPPQEQLPFRSSNGAILTGTTSASXK*LIPTNMRMQMSQKYT 58
           +G    +PP     F   +G I+TG    S K      +++  S + T
Sbjct: 197 AGAEFVDPPTPMSDFTQVDGRIVTGVNPMSAKSTAEAAIKVSQSLRKT 244


>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 155 RXGNCSCGGFPTVTPDPGSLPLLSQTPSL 241
           R G C  G  P+    PG + ++S++ +L
Sbjct: 162 RPGQCKIGIMPSHIHKPGCIGIVSRSGTL 190


>SPAC4G9.06c |||histone chaperone Chz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 242 PDLXFEKVGADFQDXASQSE 183
           PD+  E+   DFQD +S  E
Sbjct: 22  PDIDDEEDDVDFQDLSSSGE 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 919,132
Number of Sequences: 5004
Number of extensions: 14326
Number of successful extensions: 40
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)