Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19k03
         (245 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0144 - 7153464-7153822,7153933-7154837,7155962-7156224           29   0.69 
06_03_1237 + 28602250-28604196                                         27   2.1  
04_04_0671 - 27157692-27158620,27158711-27158828,27158967-271591...    27   2.8  
08_02_1257 - 25646029-25646054,25646139-25646236,25646609-256467...    26   3.7  
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998...    25   8.5  
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591...    25   8.5  
01_06_0258 + 27950196-27950749,27953670-27954570                       25   8.5  

>02_02_0144 - 7153464-7153822,7153933-7154837,7155962-7156224
          Length = 508

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 103 LFSTS*SCTX*YRPIRRPEXQLLLRRISDCDAXSWKSAPTF 225
           +F     CT    P RRP  Q +LRR+  C A  W+  P F
Sbjct: 469 VFKLGVECTM-MDPQRRPSMQTVLRRLRQC-ARWWRRFPCF 507


>06_03_1237 + 28602250-28604196
          Length = 648

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +2

Query: 68  CDICILMLVGINYFXLAEVVPVSIAPFED-RXGNCSCGGF 184
           CD C L +  ++     E++      F   + G CSCGGF
Sbjct: 608 CDDCHLFMQLVSRVESVEIIVRDNMRFHHFKNGECSCGGF 647


>04_04_0671 -
           27157692-27158620,27158711-27158828,27158967-27159156,
           27159281-27159415,27159537-27159634,27160034-27160206,
           27160299-27160772,27161464-27161518
          Length = 723

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 44  MGSLXVYFCDICILMLVGINYFXLAEVVPVSIAPFEDR 157
           M  L  Y   ICI +LVG  ++   +V+ V++    +R
Sbjct: 368 MSGLFGYKSFICIALLVGDGFYNFVKVIVVTLKSVRER 405


>08_02_1257 -
           25646029-25646054,25646139-25646236,25646609-25646700,
           25646786-25646893,25647212-25647346,25647648-25647752,
           25647951-25648088,25648865-25648963,25649079-25649195,
           25649446-25649610,25649955-25650014,25650395-25650559,
           25650636-25650746,25651220-25651333,25651466-25651531,
           25651857-25651994,25652303-25652386,25652468-25652510,
           25652621-25652676,25652772-25652880,25652944-25653026,
           25653127-25653210,25653383-25653454,25653557-25653634,
           25653717-25653800,25653892-25653962,25654095-25654164,
           25654314-25654403,25654500-25654661,25654702-25654817,
           25654946-25654988,25655069-25655185,25655897-25656046
          Length = 1082

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 230 FEKVGADFQDXASQSEIL 177
           FE++G DF D  S+S+IL
Sbjct: 576 FEQIGMDFNDARSKSQIL 593


>07_03_0965 - 22996575-22999112,22999202-22999636,22999717-22999801,
            22999888-22999957,23000050-23000293,23000396-23000482,
            23000655-23000706,23000830-23001226,23001324-23001648,
            23001748-23001914,23002007-23002547
          Length = 1646

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -3

Query: 216  GRLPGSGVTVGNPPQEQLPFRSSNGAILTGTTSASXK*LIPTN 88
            G  P SG   G PP  QLP      A    +TS +     PTN
Sbjct: 1403 GSPPASGSAKGVPPAVQLPSPQQQSAKNPASTSGAKS--APTN 1443


>04_04_1445 - 33658355-33658417,33658536-33658669,33659056-33659116,
            33659197-33659356,33660032-33660081,33662237-33662290,
            33662630-33662704,33662821-33662949,33663065-33663152,
            33663266-33663372,33663513-33663561,33663657-33663760,
            33663941-33663980,33664409-33664659,33664674-33664686,
            33665846-33666355,33666437-33667657,33667973-33668221,
            33668305-33668531
          Length = 1194

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -3

Query: 222  SRGRLPGSGVTVGNPPQEQL--PFRSSNGAILTGTTSASXK*LIPTNMRMQMSQKYT 58
            S G+ PG    V   PQ     PFR  N  ++   T       IPTN R + +Q ++
Sbjct: 858  STGQAPGEDSEVILYPQAIFKDPFRGGNNILVMCDTYTPAGEPIPTNKRNRAAQVFS 914


>01_06_0258 + 27950196-27950749,27953670-27954570
          Length = 484

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 161 GNCSCGGFPTVTPDPGSLPLLSQTP 235
           G  SC   P  TP P   P   QTP
Sbjct: 292 GTASCKPAPAPTPAPAGAPGARQTP 316


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,988,408
Number of Sequences: 37544
Number of extensions: 95405
Number of successful extensions: 226
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)