Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19k03
         (245 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC112165-1|AAI12166.1| 1444|Homo sapiens Cdc42 GTPase-activating...    29   2.1  
BC112163-1|AAI12164.1| 1444|Homo sapiens Cdc42 GTPase-activating...    29   2.1  
AB033030-1|BAA86518.1| 1445|Homo sapiens KIAA1204 protein protein.     29   2.1  
AK172812-1|BAD18782.1|  571|Homo sapiens protein ( Homo sapiens ...    29   2.7  
Y12226-1|CAA72902.1|  825|Homo sapiens gamma-adaptin protein.          28   4.8  
BC036283-1|AAH36283.1|  825|Homo sapiens adaptor-related protein...    28   4.8  

>BC112165-1|AAI12166.1| 1444|Homo sapiens Cdc42 GTPase-activating
            protein protein.
          Length = 1444

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 152  DRXGNCSCGGFPTVTPDPGSLPLLSQTPSLV 244
            D    C C G PT++P+PGS  LLS   ++V
Sbjct: 1276 DATAPCMCEG-PTLSPEPGSSNLLSTQDAVV 1305


>BC112163-1|AAI12164.1| 1444|Homo sapiens Cdc42 GTPase-activating
            protein protein.
          Length = 1444

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 152  DRXGNCSCGGFPTVTPDPGSLPLLSQTPSLV 244
            D    C C G PT++P+PGS  LLS   ++V
Sbjct: 1276 DATAPCMCEG-PTLSPEPGSSNLLSTQDAVV 1305


>AB033030-1|BAA86518.1| 1445|Homo sapiens KIAA1204 protein protein.
          Length = 1445

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 152  DRXGNCSCGGFPTVTPDPGSLPLLSQTPSLV 244
            D    C C G PT++P+PGS  LLS   ++V
Sbjct: 1277 DATAPCMCEG-PTLSPEPGSSNLLSTQDAVV 1306


>AK172812-1|BAD18782.1|  571|Homo sapiens protein ( Homo sapiens
           cDNA FLJ23973 fis, clone HEP18305, highly similar to
           ATP-binding cassette, sub-family B, member 6,
           mitochondrial precursor. ).
          Length = 571

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 57  GYIFATFAFSCWSGLIIFX*LKLY 128
           G I+ +  F+ WSGLI+F  + LY
Sbjct: 130 GIIYFSMFFNAWSGLIVFLCMSLY 153


>Y12226-1|CAA72902.1|  825|Homo sapiens gamma-adaptin protein.
          Length = 825

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 152 DRXGNCSCGGFPTVTPDPGSLPLLSQTPSLV 244
           D  G+ +  G P   P P S+P +SQ P L+
Sbjct: 661 DLLGDINLTGAPAAAPAPASVPQISQPPFLL 691


>BC036283-1|AAH36283.1|  825|Homo sapiens adaptor-related protein
           complex 1, gamma 1 subunit protein.
          Length = 825

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 152 DRXGNCSCGGFPTVTPDPGSLPLLSQTPSLV 244
           D  G+ +  G P   P P S+P +SQ P L+
Sbjct: 661 DLLGDINLTGAPAAAPAPASVPQISQPPFLL 691


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,340,863
Number of Sequences: 237096
Number of extensions: 565323
Number of successful extensions: 1115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 76,859,062
effective HSP length: 59
effective length of database: 62,870,398
effective search space used: 1383148756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)