Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19j23
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    27   2.1  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   4.8  

>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +3

Query: 291 QTLNK*QWQQSPQAIITNNLTINNDRLSTVHKRTFGSKRNEGAVRDARFD*STNNALDTI 470
           Q +NK Q  +SP A    +     +R  T HK++F +  N+ +  D+        ALD  
Sbjct: 259 QKVNKQQQIESPTATFPLSKNTWKNRFHTFHKQSF-TPVNDSSSSDSLKPTINEEALDDF 317

Query: 471 SPAVAPH 491
           + + +P+
Sbjct: 318 AGSASPY 324


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +1

Query: 139  FVASEVCFNFSISLFPCFIMKQYTSYTNFLPFLLSTTPVCHGIVYVL*KINKHSTNSN 312
            F+   +C   S  L PCF+M  +           S T  C  I+ +L  +N  +T SN
Sbjct: 918  FIFHTIC-KLSKGLIPCFLMNAFPQLEKSTTLQKSCTNFCILILQLL--LNSTATASN 972


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,742
Number of Sequences: 5004
Number of extensions: 46988
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)