Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19j17
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.1  
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual    27   2.6  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    26   4.5  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   5.9  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   7.8  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 379 SESTFRRTGTAGSVLATNNHNSKRPLRQLNHSNKRPPHRLNRPRRTANTS-SKPRYHSTD 555
           S +    + T+ S L +++ +S RP    +HS+    H+ +   ++++   S   YH++ 
Sbjct: 369 SSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNST 428

Query: 556 S 558
           S
Sbjct: 429 S 429


>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +1

Query: 445 KRPLRQLNHSNKRPPHRLNRPRRTANTSSKPRYHSTDSET 564
           KR  RQ  H+N    H L  PR  +     P Y   D E+
Sbjct: 39  KRLFRQRAHANVLSDHELEYPRSPSEMDWSPYYPDFDVES 78


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 58  RASKCLFSGIVLYLVVFNL 114
           RA KC+ S + LY ++FN+
Sbjct: 461 RALKCVCSMVTLYFIIFNI 479


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 466 NHSNKRPPHRLNRPRRTANTSSKPRYHS 549
           NH N    H  NRP RT ++S  P  +S
Sbjct: 60  NHHNINIQHHPNRPFRTNSSSFSPNDYS 87


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 472 SNKRPPHRLNRPRRTANTSSKPRYHSTDSE 561
           S+ +P H LN    T      P Y+S+ SE
Sbjct: 222 SDMQPTHELNESPSTPTAPDFPHYNSSPSE 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,197,710
Number of Sequences: 5004
Number of extensions: 37723
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)