Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19j17
         (689 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC017359-1|AAH17359.1|  394|Homo sapiens SFRS11 protein protein.       32   2.2  
AL353771-4|CAI22333.1|  389|Homo sapiens splicing factor, argini...    32   2.2  
BC040232-1|AAH40232.1|  696|Homo sapiens CCDC88B protein protein.      31   2.9  
BC030194-1|AAH30194.1|  223|Homo sapiens CCDC88B protein protein.      31   2.9  

>BC017359-1|AAH17359.1|  394|Homo sapiens SFRS11 protein protein.
          Length = 394

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +1

Query: 373 PSSESTFRRTGTAGSVLATNNHNSKRPLRQLNHSNKRPPHRLNRPRRTANTSSKPRYHST 552
           P S ST RR+ +A S+   ++   +R   + + S  R P +   P+R  + S  PR H  
Sbjct: 327 PKSYSTARRSRSASSLHICDSRERRR---RRSRSGTRSPKKPRSPKRKLSRSPSPRRHKK 383

Query: 553 DSE 561
           + +
Sbjct: 384 EKK 386


>AL353771-4|CAI22333.1|  389|Homo sapiens splicing factor,
           arginine/serine-rich 11 protein.
          Length = 389

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +1

Query: 373 PSSESTFRRTGTAGSVLATNNHNSKRPLRQLNHSNKRPPHRLNRPRRTANTSSKPRYHST 552
           P S ST RR+ +A S+   ++   +R   + + S  R P +   P+R  + S  PR H  
Sbjct: 327 PKSYSTARRSRSASSLHICDSRERRR---RRSRSGTRSPKKPRSPKRKLSRSPSPRRHKK 383

Query: 553 DSE 561
           + +
Sbjct: 384 EKK 386


>BC040232-1|AAH40232.1|  696|Homo sapiens CCDC88B protein protein.
          Length = 696

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +1

Query: 439 NSKRPLRQLNHSNKRPPHRLNRPRRTANTSSKPRYHSTDSETQ*T*GRRVPPTRAWSM 612
           + + PLR   ++ + P  R  R R   N    P  H + S+T  T G  V P+R WS+
Sbjct: 529 DGRTPLRPCRNTKQMPTERALRYRNRRNV---PSPHPSASDTVGTAGLGVQPSRHWSV 583


>BC030194-1|AAH30194.1|  223|Homo sapiens CCDC88B protein protein.
          Length = 223

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +1

Query: 439 NSKRPLRQLNHSNKRPPHRLNRPRRTANTSSKPRYHSTDSETQ*T*GRRVPPTRAWSM 612
           + + PLR   ++ + P  R  R R   N    P  H + S+T  T G  V P+R WS+
Sbjct: 56  DGRTPLRPCRNTKQMPTERALRYRNRRNV---PSPHPSASDTVGTAGLGVQPSRHWSV 110


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,439,725
Number of Sequences: 237096
Number of extensions: 1467817
Number of successful extensions: 4764
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4764
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)