Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19j15
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    30   0.22 
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    27   2.0  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    25   6.2  

>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 165 YMRTEIIIPVSKDTFFNTKWKTVVAPLCAYDMLY 266
           YM  EI+ P S + FF   W T +   C Y   Y
Sbjct: 632 YMAPEILTPGSYNAFFADMWSTAIVLHCLYFRTY 665


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 333  NIWNQEYEKGIASTTHFGLG-RPKWRPADIPTKQYVRVQVKNENPHMRIHNVLEW 494
            N  N+ Y +  AST + G    P W  ++IP ++  +V  K  N  ++ H   EW
Sbjct: 1148 NYLNKIYAEAAASTLNVGAAVSPSW-ASNIPLRRRTKVSAKAANKIVQTH---EW 1198


>SPAC1565.07c |||TATA binding protein interacting protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
 Frame = -1

Query: 503  QYGPLQHVVDSHV--RILIF-NLYS 438
            Q GP QHVVD+ +  R L+F  LYS
Sbjct: 1066 QMGPFQHVVDNSINQRQLVFETLYS 1090


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,599
Number of Sequences: 5004
Number of extensions: 57015
Number of successful extensions: 158
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)