Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19j13
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    27   2.6  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    25   6.0  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    25   7.9  

>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 16/65 (24%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = +2

Query: 170 DNVVKCI-ISGDFTVFDSVVNRVSLYD*RKKILVVTKCTLQRTMSVIWKFWSNVHYEEKL 346
           + V+ C+ I G  TV  +V++ ++     +  +   +   +RT+S +++F S ++ +EKL
Sbjct: 290 EKVLVCVVIDGRNTVHQNVLDLLASIGVYQPHIAKGRVNGKRTLSHMYEFTSTINVDEKL 349

Query: 347 HKNVA 361
           +   A
Sbjct: 350 NLTTA 354


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 191 ISGDFTVFDSVVNRVSLYD*RKKILVVTKCTLQRTMSV 304
           +S D      +V  VS    R KILV+ KC   R ++V
Sbjct: 350 LSSDKLGSAGIVREVSFGTTRDKILVIEKCANSRAVTV 387


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -3

Query: 417 SVLEKFPRISHYNN 376
           S+LEKFP +S++N+
Sbjct: 102 SILEKFPELSYFND 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,249,881
Number of Sequences: 5004
Number of extensions: 42536
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)