Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19j13
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0396 + 29014101-29014327,29014438-29014594                       37   0.013
05_01_0471 - 3751497-3751522,3751760-3751800,3752466-3752507,375...    32   0.38 
01_06_0399 + 29029628-29029854,29029967-29030119,29030516-29030528     30   1.1  
07_03_0206 + 15177873-15177921,15178047-15178174,15178431-151785...    28   4.6  

>01_06_0396 + 29014101-29014327,29014438-29014594
          Length = 127

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 24/78 (30%), Positives = 34/78 (43%)
 Frame = +3

Query: 261 YWLLRNVPYREPCPLFGNFGATFTMRRSYTKMLQFFYDNYYNEKYVGIFQARRPTLMLID 440
           YW +R+VP   P PL G+             +L   Y   +          R+P +M+ D
Sbjct: 35  YWKVRHVPGPVPLPLIGHLHLLAMHGPDVFSVLTRKYGPIFR-----FHMGRQPLVMVAD 89

Query: 441 LELXKNVLSKEFPNFSDR 494
            EL K V  K+F NF +R
Sbjct: 90  AELCKEVGVKKFKNFPNR 107


>05_01_0471 -
           3751497-3751522,3751760-3751800,3752466-3752507,
           3753249-3753310,3753398-3753584,3753692-3753826,
           3753872-3753948,3754005-3754076,3754389-3754588,
           3754675-3755020,3755463-3755519,3755655-3757433,
           3757539-3757720,3757943-3758072
          Length = 1111

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 23/79 (29%), Positives = 36/79 (45%)
 Frame = +3

Query: 303 LFGNFGATFTMRRSYTKMLQFFYDNYYNEKYVGIFQARRPTLMLIDLELXKNVLSKEFPN 482
           LFG     ++  R+    L  F  NY + K  GIF+A  P  M ID     +  S    +
Sbjct: 42  LFGLPSVHYSYVRNVKPGLPLFLFNYSDRKLHGIFEAASPGQMCIDPYAWSHDGSLR-TS 100

Query: 483 FSDRISVTTDTQREPLLRN 539
           F  ++ + T T+  PL+ +
Sbjct: 101 FPAQVRICTKTRYPPLMES 119


>01_06_0399 + 29029628-29029854,29029967-29030119,29030516-29030528
          Length = 130

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = +3

Query: 261 YWLLRNVPYREPCPLFGNFGATFTMRRSYTKMLQFFYDNYYNEKYVGIFQARRPTLMLID 440
           YW +R+VP   P P  G+             +L   Y   +          R+P +M+ D
Sbjct: 35  YWKVRHVPGPVPLPFIGHLHLLAMHGPDVFTVLARKYGPVFR-----FHMGRQPLVMVAD 89

Query: 441 LELXKNVLSKEFPNFSDR 494
            EL K V  K+F +  +R
Sbjct: 90  AELCKEVGVKKFKSIPNR 107


>07_03_0206 +
           15177873-15177921,15178047-15178174,15178431-15178521,
           15178836-15179311
          Length = 247

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 568 FHSAPLILAKFRSN--GSRCVSVVTDMRSLKFGNSLDNTFFXSSKS 437
           +HSAPL  A FRS+  GS   +       +  G SL +T F  ++S
Sbjct: 63  YHSAPLDSASFRSDRGGSAAANPWASQEIVVDGGSLGDTSFSETRS 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,727,570
Number of Sequences: 37544
Number of extensions: 240314
Number of successful extensions: 540
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)