Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19j13
         (575 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY495260-11|AAR94716.1|  603|Homo sapiens NADH dehydrogenase sub...    30   6.7  
AP008841-11|BAE14928.1|  603|Homo sapiens NADH dehydrogenase sub...    30   6.7  
AP008609-11|BAE11912.1|  603|Homo sapiens NADH dehydrogenase sub...    30   6.7  
AY063393-1|AAL48375.1|  603|Homo sapiens NADH dehydrogenase subu...    29   8.9  

>AY495260-11|AAR94716.1|  603|Homo sapiens NADH dehydrogenase
           subunit 5 protein.
          Length = 603

 Score = 29.9 bits (64), Expect = 6.7
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 345 YTKMLQFFYD-NYYNEKYVGIFQARRPTLMLIDLELXKNVLSKEFPNFSDRISVTTDTQR 521
           ++ ML F+    +    Y+G+  ++   L+L+DL   + +L K         S+TT TQ+
Sbjct: 522 FSNMLGFYPSITHRTIPYLGLLTSQNLPLLLLDLTWLEKLLPKTISQHQISTSITTSTQK 581


>AP008841-11|BAE14928.1|  603|Homo sapiens NADH dehydrogenase
           subunit 5 protein.
          Length = 603

 Score = 29.9 bits (64), Expect = 6.7
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 345 YTKMLQFFYD-NYYNEKYVGIFQARRPTLMLIDLELXKNVLSKEFPNFSDRISVTTDTQR 521
           ++ ML F+    +    Y+G+  ++   L+L+DL   + +L K         S+TT TQ+
Sbjct: 522 FSNMLGFYPSITHRTIPYLGLLTSQNLPLLLLDLTWLEKLLPKTISQHQISTSITTSTQK 581


>AP008609-11|BAE11912.1|  603|Homo sapiens NADH dehydrogenase
           subunit 5 protein.
          Length = 603

 Score = 29.9 bits (64), Expect = 6.7
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 345 YTKMLQFFYD-NYYNEKYVGIFQARRPTLMLIDLELXKNVLSKEFPNFSDRISVTTDTQR 521
           ++ ML F+    +    Y+G+  ++   L+L+DL   + +L K         S+TT TQ+
Sbjct: 522 FSNMLGFYPSITHRTIPYLGLLTSQNLPLLLLDLTWLEKLLPKTISQHQISTSITTSTQK 581


>AY063393-1|AAL48375.1|  603|Homo sapiens NADH dehydrogenase subunit
           5 protein.
          Length = 603

 Score = 29.5 bits (63), Expect = 8.9
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 345 YTKMLQFFYD-NYYNEKYVGIFQARRPTLMLIDLELXKNVLSKEFPNFSDRISVTTDTQR 521
           ++ ML F+    +    Y+G+  ++   L+L+DL   + +L K         S+TT TQ+
Sbjct: 522 FSNMLGFYPTITHRTIPYLGLLTSQNLPLLLLDLTWLEKLLPKTISQHQISTSITTSTQK 581


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,668,728
Number of Sequences: 237096
Number of extensions: 1291414
Number of successful extensions: 5911
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5911
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)