Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19j13
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    67   1e-13
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.2  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   2.9  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   5.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   6.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   6.6  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 67.3 bits (157), Expect = 1e-13
 Identities = 34/113 (30%), Positives = 58/113 (51%)
 Frame = +3

Query: 237 HYTTKGRKYWLLRNVPYREPCPLFGNFGATFTMRRSYTKMLQFFYDNYYNEKYVGIFQAR 416
           +Y T    +W  R V   +P P FG       +++S    ++  Y+ Y NE  VG++  R
Sbjct: 20  YYLTSTFDFWKSRGVVGPKPVPFFGTTKDLILVKKSTAHFVKDIYEKYKNEPMVGLYATR 79

Query: 417 RPTLMLIDLELXKNVLSKEFPNFSDRISVTTDTQREPLLRNLANMSGAEWKAM 575
            P L+L D EL K++L ++F  F++R  +    + EPL  +L N+    W+ +
Sbjct: 80  SPFLLLNDPELIKDILIRDFSKFANR-GLGVFERTEPLSPHLLNLEVERWRPL 131


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +3

Query: 276 NVPYREPCPLFGNFGATFTMRRSYTKMLQ 362
           N+P  E   LFG     F     Y K+LQ
Sbjct: 60  NIPANEILELFGRMFFEFCQDSGYDKILQ 88


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +3

Query: 276 NVPYREPCPLFGNFGATFTMRRSYTKMLQ 362
           N+P  E   LFG     F     Y K+LQ
Sbjct: 60  NIPANEILELFGRMFFEFCQDSGYDKILQ 88


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 405 KFPRISHYNNYRKKI 361
           K+   ++YNNY KK+
Sbjct: 90  KYSNYNNYNNYNKKL 104


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 337 LIVNVAPKFPNNGH 296
           L V V P FP++GH
Sbjct: 227 LPVRVLPNFPSSGH 240


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = +3

Query: 297 CPLFGNFGATFTMRRSYTKMLQFFYDNYYNEKYVGIFQA---RRPTLMLIDLELXKNVLS 467
           C +FG     F+  R+ TK+       Y++  Y+ I+++   R    +L +L    N L 
Sbjct: 16  CVIFGVLFVLFSFLRTRTKL----QPTYFHHTYI-IYESLCGRHEKRLLNELLSSYNTLE 70

Query: 468 KEFPNFSDRISV 503
           +   N S+ + V
Sbjct: 71  RPVANESEPLEV 82


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = +3

Query: 297 CPLFGNFGATFTMRRSYTKMLQFFYDNYYNEKYVGIFQA---RRPTLMLIDLELXKNVLS 467
           C +FG     F+  R+ TK+       Y++  Y+ I+++   R    +L +L    N L 
Sbjct: 16  CVIFGVLFVLFSFLRTRTKL----QPTYFHHTYI-IYESLCGRHEKRLLNELLSSYNTLE 70

Query: 468 KEFPNFSDRISV 503
           +   N S+ + V
Sbjct: 71  RPVANESEPLEV 82


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 214 KNSKITTNNTLNHIVTDSHI 155
           KN  +TTN  +  I TD H+
Sbjct: 48  KNQILTTNCWVTQIWTDHHL 67


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 337 LIVNVAPKFPNN 302
           L  NV PKFP N
Sbjct: 359 LFSNVTPKFPRN 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,802
Number of Sequences: 438
Number of extensions: 3284
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)