Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19j11
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    38   6e-05
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 38.3 bits (85), Expect = 6e-05
 Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
 Frame = +1

Query: 193 IEKMDGALSTLVSCEKLSLSSNMID--KIAGIAGMRNLKILSLGRNYIKSLSGVETVADS 366
           +  ++G  +++ S   L+LS N I+    A I G  NLK L +  N+I+SL     + DS
Sbjct: 538 LSDINGVFTSIASLLLLNLSENHIEWFDYAFIPG--NLKWLDIHGNFIESLGNYYKIRDS 595

Query: 367 -LEELWISYNPIDKLKGIGALKNLRVLYMANNAV 465
            ++ L  S+N I +L  +    ++ +L++ NN +
Sbjct: 596 KVKTLDASHNRITELSPLSVPDSVELLFINNNYI 629


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +3

Query: 384 QLQSHRQAERYWSTKESPRPIYG 452
           Q Q  +Q +++W  +E P   +G
Sbjct: 453 QQQQQQQQQQHWPMEEEPAASWG 475


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 312 RQYLKISHSRNPGY 271
           +QY+K+ HS   GY
Sbjct: 444 KQYVKVKHSATLGY 457


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 387 LQSHRQAERYWSTKESPRPIYGQ*RCQGMGGIQQITGVSG 506
           +Q  +Q  +   T +  + + G    QG+ G+Q + GV G
Sbjct: 837 VQGVQQGVQGVQTAQGVQGVQGVQGVQGVQGVQGVQGVPG 876


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 96  YYLQRSNSSLGKT 134
           Y+L+R ++ LGKT
Sbjct: 272 YFLERMSNDLGKT 284


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 96  YYLQRSNSSLGKT 134
           Y+L+R ++ LGKT
Sbjct: 272 YFLERMSNDLGKT 284


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 619 CRQVL*FVAICSLPERAMYRCPVDF 545
           C Q   F  I +LP+R M+   ++F
Sbjct: 4   CLQSSAFKEIKTLPDRGMWSSKIEF 28


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 619 CRQVL*FVAICSLPERAMYRCPVDF 545
           C Q   F  I +LP+R M+   ++F
Sbjct: 57  CLQSSAFKEIKTLPDRGMWSSKIEF 81


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 509 SAGHSCNLLNSTHSLTALLAIYR 441
           SAG   NLL ++ S   L  +YR
Sbjct: 15  SAGRPSNLLRTSFSSAKLEKLYR 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,724
Number of Sequences: 438
Number of extensions: 3673
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)