Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19j10
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    26   4.6  
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    26   6.0  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   6.0  
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    26   6.0  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    26   6.0  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    26   6.0  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   8.0  

>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -3

Query: 509 RIVEKCQAHLHDKYDRYEVCLHLYKLECDLPVMYKIFFSDLLKIHSNPV 363
           R++ K  AH HD  D+ ++ L  Y L       Y +    +L + + PV
Sbjct: 34  RVIIKSNAHKHDPSDKRQIWLEKYYLFVRQIYTYLVTHKVILTLIAVPV 82


>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 86  GHFGDSARNRSDCEL-KRYNHVFDEAGENTHYHSDSDSVASRKSKTRYIN 232
           G F     N S+ ++ K  NHV  +  + T YH+D+  +A       Y+N
Sbjct: 180 GKFKKFVVNHSETDIDKNDNHVSVQTEDGTIYHADTILLAVGAYLNAYLN 229


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 161 GENTHYHSDSDSVASRKSKTRYINPAIYVEKIE 259
           G++T Y    DS+ + KS+  Y+  A+   KIE
Sbjct: 47  GDHTQYAGLRDSLVTYKSENSYVLKALLNAKIE 79


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 396 FRLVEDTLESRPLKNGVELLL*SLCGCGVTSSTQEP 289
           + +V+  L S+  K G+E +  S C CG+ SS  EP
Sbjct: 77  YGVVDPVLASQASKAGLETIFVSGCLCGL-SSVDEP 111


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +2

Query: 572 QEAFRQWLARKEQ---EKREKARLEKQNNTLS 658
           +E + +W ARK+Q   E  E+ R +K+ + LS
Sbjct: 522 EEEYNKWFARKQQARVELEEQRRKKKEQDRLS 553


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/21 (38%), Positives = 18/21 (85%)
 Frame = +2

Query: 584 RQWLARKEQEKREKARLEKQN 646
           R+++  K+++K+EK R+E++N
Sbjct: 388 REYILDKQKQKKEKHRIERKN 408


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +3

Query: 471 LIVKMGLTLFDYPWHLFLRPQLQKKSENVTRKRNRKLFVSGW 596
           LI +  + L+D P H ++  +L+K+    +  +N K+FV+ +
Sbjct: 525 LIDQHPVILYD-PIHEYVNHELRKRENEFSEHKNVKIFVASY 565


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,157
Number of Sequences: 5004
Number of extensions: 59120
Number of successful extensions: 205
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)