Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19j08
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom... 119 4e-28
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 31 0.16
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 28 1.1
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 28 1.1
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 26 4.6
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 4.6
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 6.1
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 26 6.1
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 8.1
>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 236
Score = 119 bits (287), Expect = 4e-28
Identities = 61/136 (44%), Positives = 89/136 (65%), Gaps = 1/136 (0%)
Frame = +1
Query: 304 MFIVGLTGGLATGKSTVLSIFKE-HGIAVIDADEVARKVLEPGTKAWLEVKQYFGHGVLF 480
M I+GLTG +ATGKSTV F+E + I +IDAD +ARKV+EP T +++++ FG+ VL
Sbjct: 1 MLILGLTGSIATGKSTVSREFQEKYHIKIIDADVLARKVVEPNTPCLIKIQKEFGNEVLH 60
Query: 481 PDGRVNRLKLGEIVFDDIEKRRKLNAITHPRIQSAMIRIAFSFFFTGHTYIVMEVPLLFE 660
DG +NR KLG+ VF D KR LN+I HP ++ M++ + G++ ++++VPLLFE
Sbjct: 61 EDGTLNRAKLGQAVFQDAGKRSLLNSIIHPAVRLEMLKELLRCYVRGYSIVILDVPLLFE 120
Query: 661 TGKLLTFMHKIITVVC 708
K+ K I V C
Sbjct: 121 -AKMQFICWKTICVSC 135
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 31.1 bits (67), Expect = 0.16
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 463 GHGVLFPDGRVNRLKLGEIVFDDI-EKRRKLNAITHPRIQSAMIRIAFSFFFTGHTYIVM 639
G G FP G G+I FD+I RR+ NA+ +++I S F+TG ++ +
Sbjct: 86 GPGEGFPGGGFGFDPFGDI-FDNIFGGRRRQNAVRRGPSMEQIVQIHLSSFYTGGSF-TL 143
Query: 640 EVPL 651
E+P+
Sbjct: 144 EIPV 147
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 406 ARKVLEPGTKAWLEVKQYFGHG 471
+RK LEP + W++ FGHG
Sbjct: 347 SRKALEPVSLKWIDTASKFGHG 368
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 406 ARKVLEPGTKAWLEVKQYFGHG 471
+RK LEP + W++ FGHG
Sbjct: 347 SRKALEPVSLKWIDTASKFGHG 368
>SPAC1F12.02c |p23fy||translationally controlled tumor protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/61 (21%), Positives = 25/61 (40%)
Frame = +2
Query: 86 NAVSSRSYITLIVYLFKFVVCRVDESDFFSVVEVF*CNVMHSVQETNPVSTNLIHSKTIN 265
NA + +VY F+ D+ + S ++ + + +QE+NP + I
Sbjct: 57 NAEEGTETVNNLVYSFRLSPTSFDKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIG 116
Query: 266 F 268
F
Sbjct: 117 F 117
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 4.6
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = -3
Query: 533 ISSKTISPSFNLLTLPSGNRTPCPKYCLTSSQAFVPGSKTFRATSSASITAIPCSLNMES 354
+SS T SPS L++ S + + TSS + + S + +T +S T SL + S
Sbjct: 580 LSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISS 639
Query: 353 TVLL 342
+ ++
Sbjct: 640 SSII 643
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = +1
Query: 289 RQERNMFIVGLTGGLATGKSTVLSIFKEHGIAVIDADEVARKVLEPGTKAWLEVKQ 456
+ +RN+F+ + G + GK+ +LS F + + + V V T+ +L + +
Sbjct: 416 KYDRNVFLCFVVGSKSCGKTALLSSFINNNTNRLTPNTVVNSVEFQSTQRYLVLSE 471
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 301 NMFIVGLTGGLATGKSTVLSIFKEHGIAVIDADE 402
N +V + G +TGKST+L+ +V+DA +
Sbjct: 38 NYHVVAVLGSQSTGKSTLLNNLFGTSFSVMDASK 71
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -3
Query: 521 TISPSFNLLTLPSGNRTPCPKYCLTSSQAFVPGSKTFRATSSASITAI 378
+++PS +L PS N P P +T+S A + F +SS+S+ ++
Sbjct: 177 SVTPSASLYKQPSFNSNPAP---ITTSSA--THTSQFSTSSSSSVNSV 219
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,821,184
Number of Sequences: 5004
Number of extensions: 57313
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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