Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19j08
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0286 - 14657682-14657803,14658194-14658419,14659894-146598... 122 2e-28
08_02_0034 - 11435678-11435702,11435787-11435816,11436364-114365... 41 0.001
06_01_0859 - 6506029-6506133,6506255-6506319,6506461-6506539,650... 31 0.90
09_04_0658 + 19275129-19275363,19275453-19275544,19276440-192765... 30 1.6
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 30 1.6
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 29 2.8
03_02_0427 + 8367633-8368205,8369318-8369809,8370602-8370817,837... 29 2.8
01_06_1236 + 35613123-35613816,35615809-35615952,35616032-356161... 29 2.8
10_08_0276 + 16431141-16431837,16432062-16432175,16432887-16433521 28 8.4
>01_03_0286 -
14657682-14657803,14658194-14658419,14659894-14659899,
14661218-14661298,14662498-14662888,14663207-14663352,
14665455-14665562
Length = 359
Score = 122 bits (295), Expect = 2e-28
Identities = 60/133 (45%), Positives = 88/133 (66%)
Frame = +1
Query: 304 MFIVGLTGGLATGKSTVLSIFKEHGIAVIDADEVARKVLEPGTKAWLEVKQYFGHGVLFP 483
M +VGLTGG+A+GKST+ ++FK GI V+DAD VAR V++ GT W ++ + FG+ VL
Sbjct: 1 MRLVGLTGGIASGKSTISNLFKASGIPVVDADIVARNVVQKGTGGWKKIVEAFGNDVLLE 60
Query: 484 DGRVNRLKLGEIVFDDIEKRRKLNAITHPRIQSAMIRIAFSFFFTGHTYIVMEVPLLFET 663
+G ++R +LG+IVF D EKR+ LN + P I S + + G IV+++PLLFET
Sbjct: 61 NGEIDRARLGQIVFSDPEKRQVLNRLLAPHISSGIFWEILKLWIKGCKVIVLDIPLLFET 120
Query: 664 GKLLTFMHKIITV 702
K+ + H +I V
Sbjct: 121 -KMDQWTHPVIVV 132
>08_02_0034 -
11435678-11435702,11435787-11435816,11436364-11436501,
11436646-11436755,11436838-11436867,11437948-11437993,
11438453-11438622,11439156-11439221,11439299-11439378,
11440704-11440842,11440933-11441013,11441112-11441147,
11441414-11441539,11442084-11442179,11443615-11443689,
11444288-11444434,11445155-11445229,11445485-11445619,
11445706-11445834,11446161-11446292,11446395-11446598
Length = 689
Score = 40.7 bits (91), Expect = 0.001
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Frame = +1
Query: 313 VGLTGGLATGKSTVLS-IFKEHGIAVIDADEVARKVLEPGTKAWLEVKQYFGHGVLFPDG 489
V ++G A+GK T I +++G+ I ++ R + GT+ + K+Y +G+L PD
Sbjct: 92 VMISGAPASGKGTQCRMIVEKYGLVHISTGDLLRAEVSSGTEIGKKAKEYMDNGMLVPDQ 151
Query: 490 RVNRLKLGEIVFDDIEKRRKLNAITHPRIQSAMIRIAFSFFFTGHTYIVMEVPLLFETGK 669
V + + + D+ +R L +PR A + S +IV+E+ L + K
Sbjct: 152 VVTDMVVSRLSQPDVRERGWL-LDGYPR-SYAQAQSLESMKIRPDIFIVLEIELYNQFIK 209
Query: 670 LLTFMHKIIT 699
L +H+ IT
Sbjct: 210 FL--VHENIT 217
>06_01_0859 -
6506029-6506133,6506255-6506319,6506461-6506539,
6506764-6506893,6507231-6507396,6507515-6507569,
6507693-6507739,6508416-6508614
Length = 281
Score = 31.1 bits (67), Expect = 0.90
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +1
Query: 334 ATGKSTVLSIFKEHGIAVIDADEVARKVLEPGTKAWLEV 450
A G +V IFKEH A D A K ++ G WL+V
Sbjct: 132 AVGMPSVAQIFKEHSEAFF-RDNEAMKYMKKGLSVWLDV 169
>09_04_0658 +
19275129-19275363,19275453-19275544,19276440-19276509,
19276617-19276735,19277026-19277122,19277229-19277308,
19277443-19277637,19277727-19277810,19277931-19277991,
19278682-19278742,19279162-19279255,19279357-19279429,
19279834-19279916,19280008-19280154
Length = 496
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = +1
Query: 298 RNMFIVGLTGGLATGKSTVLSI----FKEHGIAVIDADEVAR 411
R F++G++GG A+GK+TV + +H + +++ D R
Sbjct: 73 RQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYR 114
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = +1
Query: 307 FIVGLTGGLATGKSTVLSI----FKEHGIAVIDADEVARKVLE 423
F++G++GG A+GK+TV + +H + +++ D R + E
Sbjct: 68 FVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTE 110
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 346 STVLSIFKEHGIAVIDADEVARKVLEPGTKAWLEVKQYFGHGVLF 480
ST++S F+E + DAD ++E KA L+++ + + LF
Sbjct: 1555 STLISKFEEAQATISDADTTVNALVEANEKAKLQIQNFKENEALF 1599
>03_02_0427 +
8367633-8368205,8369318-8369809,8370602-8370817,
8371914-8372237,8372991-8373233,8374056-8374250
Length = 680
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -2
Query: 390 YYGNSVFFKYGEHCALACCEATSQSNNEHISFLPYIHKH 274
YYG V Y E A A A SQSN + + L Y+H+H
Sbjct: 532 YYGRGVGRDY-ERAAEAYMHAQSQSNAQAMFNLGYMHEH 569
>01_06_1236 +
35613123-35613816,35615809-35615952,35616032-35616184,
35616572-35616687,35616800-35616967,35617647-35617707,
35617772-35617824,35618278-35618508,35618600-35618749
Length = 589
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 391 DADEVARKVLEPGTKAWLEVKQYFGHGVLFPDGRVNRLKLGEIVFDDIEKRRKLN 555
+A ++ R++LEP K L KQ H L + + LG+IV +++ ++N
Sbjct: 307 NAKDLVRRMLEPDPKLRLTAKQVLEHPWLQNAKKAPNVPLGDIVKSRLKQFSRMN 361
>10_08_0276 + 16431141-16431837,16432062-16432175,16432887-16433521
Length = 481
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/67 (26%), Positives = 27/67 (40%)
Frame = -3
Query: 515 SPSFNLLTLPSGNRTPCPKYCLTSSQAFVPGSKTFRATSSASITAIPCSLNMESTVLLPV 336
SP FNL+ + R P PK + P T T + + A P + + +PV
Sbjct: 240 SPKFNLIQAAAVQRKPSPKISRHQKKKTSPKGHTAEGTMNFTSIA-PSQVPITQPFQVPV 298
Query: 335 ARPPVSP 315
+P P
Sbjct: 299 TQPSHIP 305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,688,635
Number of Sequences: 37544
Number of extensions: 313722
Number of successful extensions: 722
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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