Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19j08
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27079-5|CAA81598.2|  237|Caenorhabditis elegans Hypothetical pr...   121   4e-28
AC024844-7|AAK29952.3|  461|Caenorhabditis elegans Hypothetical ...    69   3e-12
Z49936-2|CAA90181.1|  586|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AY834228-1|AAV91314.1|  589|Caenorhabditis elegans Toll and inte...    30   1.9  
AF003389-1|AAC71138.2|  865|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z83234-2|CAB70170.2|  715|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine re...    28   7.6  

>Z27079-5|CAA81598.2|  237|Caenorhabditis elegans Hypothetical
           protein T05G5.5 protein.
          Length = 237

 Score =  121 bits (292), Expect = 4e-28
 Identities = 60/124 (48%), Positives = 85/124 (68%), Gaps = 3/124 (2%)
 Frame = +1

Query: 304 MFIVGLTGGLATGKSTVLSIFKEHGIAVIDADEVARKVLEPGTKAWLEVKQYFGHGVLFP 483
           M +VGL+GG+ATGKSTV S+F+ HG+ +IDAD+VAR+V+ PGT  +  +++ FG    F 
Sbjct: 11  MLVVGLSGGVATGKSTVSSVFRAHGVPIIDADQVARQVVVPGTSTYNRLRKEFG-DEYFD 69

Query: 484 D---GRVNRLKLGEIVFDDIEKRRKLNAITHPRIQSAMIRIAFSFFFTGHTYIVMEVPLL 654
           D   G + R KLG+++F + EKR+ LN ITHP I+  M +   +   TG  YIV + PLL
Sbjct: 70  DEHGGVLRRDKLGKLIFSNPEKRKALNGITHPAIRWEMFKQFLTLLITGTKYIVFDTPLL 129

Query: 655 FETG 666
           FE+G
Sbjct: 130 FESG 133


>AC024844-7|AAK29952.3|  461|Caenorhabditis elegans Hypothetical
           protein Y65B4A.8 protein.
          Length = 461

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
 Frame = +1

Query: 307 FIVGLTGGLATGKSTVLSIFKE-HGIAVIDADEVARKVLEPGTKAWLEVKQYFGHGVLFP 483
           +I+GL GG+A+GKS +    +E H   VID D++A    E G+    ++ ++FG  V+  
Sbjct: 266 YIIGLAGGIASGKSHIGKYLRETHNFDVIDCDKLAHTCYERGSSLNRKIGEHFGGDVVV- 324

Query: 484 DGRVNRLKLGEIVFDDIEKRRKLNAITHPRIQSAMIRIAFSFFFTGHTYIVMEVPLLFET 663
           DG V+R KLG IVF D  K R+L+ +  P ++   + I      +    +V+E   L E 
Sbjct: 325 DGVVDRRKLGTIVFSDKVKLRELSELVWPEVKEKAMEIVKK---STAKVVVIEAAALIEA 381

Query: 664 G 666
           G
Sbjct: 382 G 382


>Z49936-2|CAA90181.1|  586|Caenorhabditis elegans Hypothetical
           protein F13B10.1b protein.
          Length = 586

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -3

Query: 533 ISSKTISPSFNLLTLPSGNRTPCPKYCLTSSQAFVPGSKTFRATSSASITAIPCSLNMES 354
           +SS  +S  FN    P   R   P++   S +     +      SS+SIT+ P SL + +
Sbjct: 5   VSSPMVSLPFNENVAPECRRNLLPRFAAVSPRPKAAVTPFVSTPSSSSITSFPYSLKLSN 64

Query: 353 T 351
           +
Sbjct: 65  S 65


>AY834228-1|AAV91314.1|  589|Caenorhabditis elegans Toll and
           interleukin 1 receptordomain protein isoform f protein.
          Length = 589

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -3

Query: 533 ISSKTISPSFNLLTLPSGNRTPCPKYCLTSSQAFVPGSKTFRATSSASITAIPCSLNMES 354
           +SS  +S  FN    P   R   P++   S +     +      SS+SIT+ P SL + +
Sbjct: 5   VSSPMVSLPFNENVAPECRRNLLPRFAAVSPRPKAAVTPFVSTPSSSSITSFPYSLKLSN 64

Query: 353 T 351
           +
Sbjct: 65  S 65


>AF003389-1|AAC71138.2|  865|Caenorhabditis elegans Hypothetical
           protein F23H11.2 protein.
          Length = 865

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 378 SVFFKYGEHCALACCEATSQSNNEHISFL 292
           + F KY  HC +A C +    N+EH+ F+
Sbjct: 150 ATFQKYLAHCQVAFCHSEQCGNDEHLRFV 178


>Z83234-2|CAB70170.2|  715|Caenorhabditis elegans Hypothetical
           protein K09E4.4 protein.
          Length = 715

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 579 KRNDKNCIFILFHWSYLY 632
           K+ DKNC+++L  WS+ Y
Sbjct: 350 KKVDKNCVWVLQSWSFTY 367


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical protein
            C18H2.1 protein.
          Length = 1770

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 336  CEATSQSNNEHISFLPYIHKHLGKFIVL 253
            CE   +  N +I   PY+H HLG   V+
Sbjct: 1120 CEKFPEKKNFNIGSHPYLHAHLGPLFVI 1147


>Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical
           protein ZC518.2 protein.
          Length = 984

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = -3

Query: 512 PSFNLLTLPSGNRTPCPKYCLTSSQAFVPGSKTFRATSSASITA-IPCSLNMESTVLLPV 336
           PSF+  T PS N    P     S     P       +++ SI   IP +L        P 
Sbjct: 107 PSFSPATQPSMNGHHAPPPPAVSRPPAFPTPPPSVGSAAPSIQPPIPSALASARPAPFPA 166

Query: 335 ARPPVSPT 312
           A+PP +PT
Sbjct: 167 AQPPPAPT 174


>AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine
           receptor, class t protein62 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = -2

Query: 594 SYHCALYPWMCDSIKFTSFFYIIKNNF--AKF*SVNSSIR--EQNSMSKILLNLKPSFCA 427
           SY    + W+C+S      ++I+ NN   +K  S  S  +  E  + S I +N+     A
Sbjct: 257 SYTALNFMWICNSAVHPIIYFIVNNNSTNSKICSKYSKFKMFEFFNYSTIPININACVLA 316

Query: 426 RF*NFS 409
           RF NFS
Sbjct: 317 RF-NFS 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,603,672
Number of Sequences: 27780
Number of extensions: 319433
Number of successful extensions: 881
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)