Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19j07
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    23   1.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   4.0  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   5.3  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    21   7.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   7.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   9.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   9.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   9.3  

>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 343 LSRIFSIFLSLHFPASIQGPLLYERTRPLSQ 251
           LS +F +F+  +FP+ I     Y +  P+S+
Sbjct: 34  LSNLFWLFVGTYFPSLIGANEHYSKFFPVSE 64


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 405 FFFMYIERSEFIQFFSYKS 349
           ++F Y+ RSE I +++  S
Sbjct: 442 YWFAYLSRSERINYYNVNS 460


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 39  CKMKVLWGIVLFSSFASKLIE 101
           CK + LW   + S F+ + IE
Sbjct: 94  CKEEALWNFPMISVFSRQDIE 114


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 333 FFQFFCLYTSPLLYKDLC 280
           +FQ +CL+   L+ K+ C
Sbjct: 17  YFQQYCLHHKILIKKNKC 34


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
 Frame = +3

Query: 243 GCYCDKGLVRSYSKGPCIEA--GKCRDKKIEKILDNLPIYKK 362
           GC+C  G      K  C E   GK + +      +  P + K
Sbjct: 246 GCHCKPGYQADVEKQECTECPIGKFKHEAGSHSCEACPAHSK 287


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 61  ESFCSPRLHLS*LRAPH 111
           +  CSP+LH+  L   H
Sbjct: 151 QPMCSPKLHVFDLNTSH 167


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 295 IQGPLLYERTRPL 257
           +Q P LY+ T+P+
Sbjct: 567 LQAPSLYDTTKPI 579


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 232 CLNFFDNVLVLSILLDE 182
           CL  F NVLV+  ++ E
Sbjct: 198 CLTLFGNVLVILAVVRE 214


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 396 MYIERSEFIQFFSYKSVNCQG 334
           ++     F  F+S +S+N QG
Sbjct: 790 LFASMPNFADFYSEESINNQG 810


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,499
Number of Sequences: 438
Number of extensions: 2169
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)