Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19j02
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    29   0.43 
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    28   1.3  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    27   2.3  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    27   2.3  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.0  
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    26   5.3  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    26   5.3  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   7.0  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    25   7.0  

>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 199 KLKGLRDRLQKLGFRVDLVPVEYINYCVLEMCGHEIFRCNIQNLLFNMP 345
           K+ G++D   K G  V +VP  Y+N   +      +  C +Q++ F  P
Sbjct: 390 KMNGMKDASYK-GVSVQVVPQTYVNAKPVVFARFNMHTCKVQDVSFTSP 437


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1076

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 352  WCAAY*RVGFECCSEISHDRTFQGHNNLYI 263
            WC      GF+  SEIS+DR  +  +NL +
Sbjct: 958  WCNMPSVAGFDVLSEISYDRMLENCSNLLL 987


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 578 D*IVSVSMPQQLTQSKHPAKFLASYSKGQ*SLGVYSFLKKICSWMS 441
           D  VS S    L    + A ++AS  +   SL + S LKK  SW S
Sbjct: 200 DHAVSSSSSSDLPSDPNSASYIASSKQKASSLKLTSSLKKFYSWTS 245


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 163 CNSFHTTVHKPQKLKGLRDRLQKLGFRVD 249
           CN  H+ + KP K+    DR++KL   +D
Sbjct: 627 CNHLHSHLDKPPKVSKEEDRIKKLMMFLD 655


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 546 LLRHRYGNYLVIHILYRRLRLY 611
           L+++ YGNYLV H+L   ++ Y
Sbjct: 651 LVQNAYGNYLVQHVLELNIQPY 672


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 465 KERIHTEGSLAF*IRGQKFCRMFGL 539
           K+R+  + SLA  + G+KFC   GL
Sbjct: 96  KDRVADDPSLAVEVWGKKFCNPIGL 120


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = +1

Query: 427 LWFWRLIQEQIFLRNEYTPRDHWPFEYEAKNFAGCLDCVNCCGIDTETI*S---YIFYIV 597
           L FW  +Q+ + L  E    DHW  +  A +   C   +   G +   + +   YIF + 
Sbjct: 209 LGFW--LQQILVLHLEQRRADHW--QMFAHHIVTCALIILSYGFNFLRVGNAILYIFDLS 264

Query: 598 DYVCTRNKCLTY 633
           DY+ +  K L Y
Sbjct: 265 DYILSGGKMLKY 276


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 295 GHEIFRCNIQNLLFNMPHTTDPVCNRAVQAVVESSAKFK 411
           G  I  C  QN  +N+ H TDP+  R    VV+  A+ K
Sbjct: 595 GVSILSC--QNF-YNIFHPTDPISYRVEPLVVKQMARLK 630


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 320 FKTYSSICRTPRILSAIALYKPLSNRQRSS 409
           FK Y SIC     LS + ++  + +R R S
Sbjct: 304 FKAYPSICDLSIFLSLLPIFNKVQDRMRYS 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,022
Number of Sequences: 5004
Number of extensions: 54709
Number of successful extensions: 147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)