Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19j02
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0431 + 3324118-3324405,3324513-3324572,3325352-3326143           30   1.4  
02_02_0422 + 10053666-10053684,10054178-10054426,10054552-10055045     29   4.1  
08_02_0468 - 17505905-17506002,17506295-17506424,17506662-175067...    27   9.6  

>03_01_0431 + 3324118-3324405,3324513-3324572,3325352-3326143
          Length = 379

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 172 FHTTVHKPQKLKGLRDRLQKLGFR-VDLVP 258
           FH  +H+  K+KGL D   K   R +D+VP
Sbjct: 234 FHQLIHQQDKMKGLEDTFSKKRTRSIDIVP 263


>02_02_0422 + 10053666-10053684,10054178-10054426,10054552-10055045
          Length = 253

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 482 RGIIG-LLNTRPKILQDVW-TASTVAASIRKLSSHTYSIS*IT 604
           R IIG +L + PKI+QD W T  T   S   ++ HT S+  +T
Sbjct: 165 RMIIGTILRSCPKIVQDEWQTLCTGTGSTSGMNFHTDSVGSLT 207


>08_02_0468 -
           17505905-17506002,17506295-17506424,17506662-17506778,
           17506881-17506959,17507546-17507654,17507857-17507969,
           17510510-17510570,17511562-17511742,17512903-17512960,
           17514292-17514497,17514582-17514671,17514752-17514813,
           17514911-17514979,17515330-17515334,17516282-17516454
          Length = 516

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 325 NLLFNMPHTTDPVCNRAVQAVVESSAKFKR 414
           NLLF+ P+  DP+ + A   + ++  KF+R
Sbjct: 437 NLLFSQPNDEDPLNHEAAAVLRDNPEKFER 466


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,081,594
Number of Sequences: 37544
Number of extensions: 316884
Number of successful extensions: 805
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)