Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19j02
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical ...    31   0.70 
Z78411-2|CAB01646.1|  285|Caenorhabditis elegans Hypothetical pr...    31   0.93 
AF016452-14|AAB66020.1|  409|Caenorhabditis elegans Hypothetical...    30   1.6  
U41009-9|AAA82283.1|  131|Caenorhabditis elegans Defective sperm...    28   4.9  
U37713-1|AAC47276.1|  131|Caenorhabditis elegans SPE-27 protein.       28   4.9  
U53150-10|AAA96130.3|  433|Caenorhabditis elegans Hypothetical p...    27   8.6  
AC090999-21|AAK26150.1|  530|Caenorhabditis elegans Hypothetical...    27   8.6  

>AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical
           protein Y4C6A.3 protein.
          Length = 330

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +1

Query: 280 VLEMCGHEIFRCNIQNLLFNMPHTTDPVCNRAVQAVVESSAKFKRARSYLWFWRLIQE 453
           +L+ CGH +    IQN+L +    + P+C ++V  + E + K  +        +L+QE
Sbjct: 273 ILDKCGHTLCEGCIQNILKHSNQISCPIC-KSVTVINECTCKIGQFAKNYGVLQLVQE 329


>Z78411-2|CAB01646.1|  285|Caenorhabditis elegans Hypothetical
           protein F02D8.2 protein.
          Length = 285

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 262 EYINYCVLEMCGHEIFRCNIQNLLFNMPHTTDPVCNRAVQAVVES 396
           +++   V EM   E  RCN+Q     + H T  + N +++A+V S
Sbjct: 168 QFLEQKVGEMLKPEWQRCNLQRFATQLQHETQQMFNHSMEAIVAS 212


>AF016452-14|AAB66020.1|  409|Caenorhabditis elegans Hypothetical
           protein T05H4.15a protein.
          Length = 409

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/101 (22%), Positives = 39/101 (38%)
 Frame = +1

Query: 253 VPVEYINYCVLEMCGHEIFRCNIQNLLFNMPHTTDPVCNRAVQAVVESSAKFKRARSYLW 432
           VP  Y  +C       +      +++ FN  + TD   N+ ++  +        +R+ LW
Sbjct: 264 VPSLYF-WCRAAFSDEQFLELKAKSMSFNAVNITDNGINQFLKNWINGKGVPGFSRALLW 322

Query: 433 FWRLIQEQIFLRNEYTPRDHWPFEYEAKNFAGCLDCVNCCG 555
             R   + + +R     +    FE EA  F G  D    CG
Sbjct: 323 SRRQADKPVLIRGFEVRQWEGDFEREASGFCG--DFERVCG 361


>U41009-9|AAA82283.1|  131|Caenorhabditis elegans Defective
           spermatogenesis protein27 protein.
          Length = 131

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 137 LNDILLSTLSTALSFYST*YDDNFDIN 57
           +N  L+  LS A S YST  ++NFDIN
Sbjct: 1   MNKSLIFLLSFAYSCYSTKTENNFDIN 27


>U37713-1|AAC47276.1|  131|Caenorhabditis elegans SPE-27 protein.
          Length = 131

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 137 LNDILLSTLSTALSFYST*YDDNFDIN 57
           +N  L+  LS A S YST  ++NFDIN
Sbjct: 1   MNKSLIFLLSFAYSCYSTKTENNFDIN 27


>U53150-10|AAA96130.3|  433|Caenorhabditis elegans Hypothetical
           protein F20A1.9 protein.
          Length = 433

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +3

Query: 375 CTSRCRIVSEVQESTELPLVLEAHPGTDLLKERIHTEGSLAF*IRGQKFCRMF 533
           C+  CRI   + E   + ++       DLLKE  H    LA    G  FC  F
Sbjct: 300 CSPLCRIKVSILEVIPVGVIKVKLRKADLLKEEAHDFPKLACHSVGGSFCDCF 352


>AC090999-21|AAK26150.1|  530|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.2 protein.
          Length = 530

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 145 QVYYGPCNSFHTTVHKPQKL 204
           Q  + PC+S HT  H PQKL
Sbjct: 257 QQNFPPCHSEHTDEHAPQKL 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,532,318
Number of Sequences: 27780
Number of extensions: 304156
Number of successful extensions: 773
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)