Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19i24
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         37   0.003
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   2.5  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    27   3.3  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    26   4.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   4.3  
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    25   7.6  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   10.0 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   10.0 

>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
 Frame = +1

Query: 106 AMVALGGADAYFE------FGIHAWDVAAGTVLVREAGGVVIDPAGGPFD 237
           A +A G  D Y        F    WD A G++LV EAGGVV D  G P D
Sbjct: 261 ASLARGDGDIYLRLPTKMTFEEKIWDHAGGSLLVEEAGGVVSDMFGKPLD 310


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 21/71 (29%), Positives = 30/71 (42%)
 Frame = -2

Query: 360 SNSFHKL*GNLISLRIKLNYIF*DLFC*FHCTGTEYSPRQYVKWSTSRINDHSTSFPHQN 181
           S ++  L G L SLR    ++F  L         E   +    WS     D+S S  HQ 
Sbjct: 787 SKNWIPLSGLLFSLRAHDTFMFDGLL---DRLNEESRTKLVSSWSKQDAFDYSKSSTHQE 843

Query: 180 SSCCNIPSMNT 148
               N+P++NT
Sbjct: 844 HLSKNLPTLNT 854


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 251 LLDNMSNGPPAGSMTTPPASLTKTVPAATSQ 159
           LL  +SNG P  S  T     T+ +P ATS+
Sbjct: 199 LLTEVSNGAPLSSFFTVLELFTELIPEATSK 229


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 302 IFFEISSANSIVLALSILLDNMSNGPPAGSMTTPPA 195
           +FF +S+     +    +L N+   PPAG +T  PA
Sbjct: 146 LFFALSNTEKTRVRSLQILANILKNPPAGPVTEHPA 181


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -3

Query: 236  SNGPPAGSMTTP-PASLTKTVPAATSQA*IPNSK*ASAPPKATIAIFSAAEPNVLTP 69
            S+G P+     P P+S   ++PA +    +P        PK ++A     +P+V  P
Sbjct: 1056 SSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVP 1112


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 31  VMENYKILVSKGHGVRTLGSAALNMAMVALGGADAYFEFG--IHAWDVAAGTV 183
           +++  + + SK      LGS+AL +A+V +GG     E G  I  W    G +
Sbjct: 86  ILQETEKIPSKKVAFWLLGSSALVLAIVVVGGITRLTESGLSITEWKPITGVI 138


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
 Frame = -3

Query: 230 GPPAGSMTT---PPASLTKTVPAATS 162
           G PA + TT   PPAS T T PA  S
Sbjct: 174 GKPAATGTTSNAPPASSTSTTPATGS 199


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 284 SANSIVLALSILLDNMSNGPPAGSMTTPPASLTKTVPAATS 162
           +++S +L+ S      ++ PP G+ TTP   +T TVP  +S
Sbjct: 381 TSSSPLLSTSTSCTTSTSIPPTGNSTTP---VTPTVPPTSS 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,599
Number of Sequences: 5004
Number of extensions: 54275
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)