Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19i22
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +1

Query: 229 RGPGGAPTDV-DSNAFALPDD----SINYDPSLTYGRVKQP 336
           RGPGG PT V  +   ++ DD     + + P     ++K+P
Sbjct: 400 RGPGGVPTSVIQAATSSVSDDLYLLELGFPPRSKKNKLKKP 440


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -1

Query: 435 FIRIFKHWLFEKCREIKAAFVIMDP 361
           F+RIF H L    REI   F    P
Sbjct: 314 FMRIFGHHLNRLGREISTYFTFTRP 338


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 415 VFENPDENYRVRVVNIVYFLEDDSMTVMEPRIKNS 519
           +F N D NY VR  + V    +  +  + P I  S
Sbjct: 115 LFNNADGNYEVRYKSNVLIYPNGDVLWVPPAIYQS 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,009
Number of Sequences: 438
Number of extensions: 4384
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)