Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19i21
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    30   0.36 
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   3.3  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   4.4  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    26   4.4  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    26   5.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   7.7  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   7.7  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 673  YIYINYTGCFLELCQCEWSLTMGSQWPYEKAQGHPKSNGEGY 548
            YIY++    F+ +C+ +      ++WPY+K     + NG  Y
Sbjct: 992  YIYVDENS-FIRICKFQEDFEYDNKWPYKKVSLGKQINGIAY 1032


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
 Frame = +1

Query: 373 SSTRSPLKNLLA----PTAIRSASNVSCPLPLQCRNPLG-YVGYHGFPANLLISDLISQG 537
           SS ++PL  L A    P A++S +   CP+   C N LG  + Y     + ++  L  +G
Sbjct: 290 SSLKTPLCYLDANDDNPLALQSQTVKQCPVCTPCLNDLGKALPYAHITQSAIVDSLTGEG 349

Query: 538 -NSEHSPL 558
            +S++ P+
Sbjct: 350 LDSDNCPV 357


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 240 STAGHRPTPSLATETGPVLPASSGSPRTSIGCRPTLWEAYPRYVFQYA 383
           S AG RPTPS+        P+S  S   S+   P++  A  + V QY+
Sbjct: 149 SEAGERPTPSVGA------PSSLASSMDSVRVAPSMLAASHQIVPQYS 190


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -2

Query: 627 VNGRSQWAHNGLMRRLKVTQRAMERAMLGVSLRDQIRNEEIRRK 496
           ++ +S W H  L R++            G  L  Q +NEE+++K
Sbjct: 22  IHWKSDWHHYNLKRKVASLPPLSAEVFAGKILSIQKQNEEVQKK 65


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 252 HRPTPSLATETGPVLPASSGSPRT 323
           +RP  +  TE  P +P  +GSP T
Sbjct: 518 YRPASTQPTENPPAMPDHNGSPTT 541


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 231 PWTSTAGHRPTPSLATETGPVLPASSGSPRTSIGCRPT 344
           P T T+    T ++   T  ++P + G+P +S+   PT
Sbjct: 864 PTTFTSTFSFTTTIIGGTTTIIPVNPGNPSSSVSAPPT 901


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 310 DPREPQ*VVGPPCGRPTHATSSSTRSPLKNLLAPTAI 420
           +P +   V   P G PT   SS+  SP+   +AP  I
Sbjct: 613 NPSQHTSVAPSPNGTPTSGNSSTVGSPMIGYMAPQFI 649


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,224,932
Number of Sequences: 5004
Number of extensions: 76035
Number of successful extensions: 212
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)