Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19i21
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical ... 90 1e-18
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 87 1e-17
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 85 3e-17
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 85 3e-17
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 85 3e-17
U88178-6|ABA03112.1| 312|Caenorhabditis elegans Hypothetical pr... 34 0.082
Z74039-2|CAA98501.1| 448|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z70204-4|CAA94114.2| 437|Caenorhabditis elegans Hypothetical pr... 31 0.77
AY305832-1|AAR11977.1| 437|Caenorhabditis elegans nuclear recep... 31 0.77
AY305831-1|AAR11976.1| 437|Caenorhabditis elegans nuclear recep... 31 0.77
AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical ... 30 1.8
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z81072-10|CAB03028.1| 423|Caenorhabditis elegans Hypothetical p... 29 3.1
Z81072-9|CAB03025.1| 440|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF273774-1|AAG15123.1| 433|Caenorhabditis elegans nuclear recep... 28 5.4
Z29094-8|CAA82337.1| 254|Caenorhabditis elegans Hypothetical pr... 28 7.1
U61947-14|ABA29341.1| 413|Caenorhabditis elegans Nuclear hormon... 28 7.1
U61947-13|AAB03131.3| 429|Caenorhabditis elegans Nuclear hormon... 28 7.1
AY204189-1|AAO39193.1| 429|Caenorhabditis elegans nuclear recep... 28 7.1
AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical ... 28 7.1
AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical ... 28 7.1
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 28 7.1
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 28 7.1
AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical ... 28 7.1
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 28 7.1
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 28 7.1
U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p... 27 9.4
AF038623-7|AAB94157.1| 338|Caenorhabditis elegans Seven tm rece... 27 9.4
>AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical
protein Y51F10.8 protein.
Length = 204
Score = 90.2 bits (214), Expect = 1e-18
Identities = 49/133 (36%), Positives = 72/133 (54%), Gaps = 14/133 (10%)
Frame = -2
Query: 621 GRSQWAHNG-LMRRLKVTQRAMERAMLGVSLRDQ----IRNEEIRRKTMVTDIAQRIATL 457
G W L+ R++VT A+ER ++G++L +Q I EE+R K+ + D I
Sbjct: 62 GSEAWTFTKELVERVRVTHAALERKLVGLTLTEQRERNIHREEVREKSKLRDPLIHIKKR 121
Query: 456 KWQWAGHIARGTDGRWGQKVLEWRPRTGRRSVGRPPTRWADNLLR-------FAGIR--W 304
K WAGH+AR TDGRW + +W PR +R VGRPP RW D+L + F ++ W
Sbjct: 122 KLGWAGHVARRTDGRWTTLMNDWCPRDEKRPVGRPPMRWNDSLRKEVTTRDAFGQVKQLW 181
Query: 303 MQAAQGRSLWRGL 265
A+ R W+ +
Sbjct: 182 STQAKDRKAWKAV 194
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 86.6 bits (205), Expect = 1e-17
Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 5/103 (4%)
Frame = -2
Query: 621 GRSQWAHN-GLMRRLKVTQRAMERAMLGVSLRDQ----IRNEEIRRKTMVTDIAQRIATL 457
G W L R+++T ++ER ++G++L Q + E+IR+ ++V D +
Sbjct: 277 GSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRKMSLVRDPLNFVKKR 336
Query: 456 KWQWAGHIARGTDGRWGQKVLEWRPRTGRRSVGRPPTRWADNL 328
K WAGH+AR DGRW + EWRP +R VGRPP RW D+L
Sbjct: 337 KLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSL 379
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical protein
F20B4.7 protein.
Length = 891
Score = 85.4 bits (202), Expect = 3e-17
Identities = 40/103 (38%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Frame = -2
Query: 621 GRSQWAHN-GLMRRLKVTQRAMERAMLGVSLRDQ----IRNEEIRRKTMVTDIAQRIATL 457
G W L R+++T ++ER ++G++L Q + E+IR ++V D +
Sbjct: 751 GSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKR 810
Query: 456 KWQWAGHIARGTDGRWGQKVLEWRPRTGRRSVGRPPTRWADNL 328
K WAGH+AR DGRW + EWRP +R VGRPP RW D+L
Sbjct: 811 KLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSL 853
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 85.4 bits (202), Expect = 3e-17
Identities = 40/103 (38%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Frame = -2
Query: 621 GRSQWAHN-GLMRRLKVTQRAMERAMLGVSLRDQ----IRNEEIRRKTMVTDIAQRIATL 457
G W L R+++T ++ER ++G++L Q + E+IR ++V D +
Sbjct: 926 GSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKR 985
Query: 456 KWQWAGHIARGTDGRWGQKVLEWRPRTGRRSVGRPPTRWADNL 328
K WAGH+AR DGRW + EWRP +R VGRPP RW D+L
Sbjct: 986 KLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSL 1028
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 85.4 bits (202), Expect = 3e-17
Identities = 40/103 (38%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Frame = -2
Query: 621 GRSQWAHN-GLMRRLKVTQRAMERAMLGVSLRDQ----IRNEEIRRKTMVTDIAQRIATL 457
G W L R+++T ++ER ++G++L Q + E+IR ++V D +
Sbjct: 665 GSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKR 724
Query: 456 KWQWAGHIARGTDGRWGQKVLEWRPRTGRRSVGRPPTRWADNL 328
K WAGH+AR DGRW + EWRP +R VGRPP RW D+L
Sbjct: 725 KLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSL 767
>U88178-6|ABA03112.1| 312|Caenorhabditis elegans Hypothetical
protein W09C3.8 protein.
Length = 312
Score = 34.3 bits (75), Expect = 0.082
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -2
Query: 450 QWAGHIARGTDGRWGQKVLEWRP---RTGRRSVGRPPTRWADNL 328
++AGHI R RW + EW P + +R+VG RWA ++
Sbjct: 215 RFAGHILRRDPNRWTKICTEWDPSHNKNWKRAVGGQKKRWAKDI 258
>Z74039-2|CAA98501.1| 448|Caenorhabditis elegans Hypothetical
protein K03B8.2 protein.
Length = 448
Score = 31.5 bits (68), Expect = 0.58
Identities = 28/121 (23%), Positives = 49/121 (40%)
Frame = -2
Query: 402 KVLEWRPRTGRRSVGRPPTRWADNLLRFAGIRWMQAAQGRSLWRGLG*AYVQQWTSMGTC 223
++L + +R + + +W D A + + + SL R L +Y S TC
Sbjct: 70 RILNGTAKRSKRQITKIWKKWPD-----AKVFYYYENEFTSLKRELM-SYAMAHISSNTC 123
Query: 222 SPMNFHDDRARKIMFANIVVCVIIDGMSSCLVCGRVGDAAYFYGNSCLKTGTAGIQLSHT 43
+ +I F N C GM+ G+ ++G+ CL GTA ++ H+
Sbjct: 124 VKFQESNSATNRIRFTNTGGCASYIGMNG-------GEQTLWFGDGCLIFGTAVHEIMHS 176
Query: 42 L 40
L
Sbjct: 177 L 177
>Z70204-4|CAA94114.2| 437|Caenorhabditis elegans Hypothetical
protein C11G6.4a protein.
Length = 437
Score = 31.1 bits (67), Expect = 0.77
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 156 IIDGMSSCLVCGRVGDAAYFYGNSC 82
+I G S C VCG GD A+F +C
Sbjct: 1 MIIGKSPCSVCGEAGDGAHFGAEAC 25
>AY305832-1|AAR11977.1| 437|Caenorhabditis elegans nuclear receptor
NHR-28 protein.
Length = 437
Score = 31.1 bits (67), Expect = 0.77
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 156 IIDGMSSCLVCGRVGDAAYFYGNSC 82
+I G S C VCG GD A+F +C
Sbjct: 1 MIIGKSPCSVCGEAGDGAHFGAEAC 25
>AY305831-1|AAR11976.1| 437|Caenorhabditis elegans nuclear receptor
NHR-28 protein.
Length = 437
Score = 31.1 bits (67), Expect = 0.77
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 156 IIDGMSSCLVCGRVGDAAYFYGNSC 82
+I G S C VCG GD A+F +C
Sbjct: 1 MIIGKSPCSVCGEAGDGAHFGAEAC 25
>AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical
protein Y5H2A.4 protein.
Length = 558
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +3
Query: 297 PASSGSPRTSIGCRPTLWEAYPRYVFQYAVATQEPSGPNGHPFREQCVLP 446
P + + ++ C+PT +A P+ Q A Q+PS P + C P
Sbjct: 218 PVQQCTQQCTLECQPTCQQAVPQCQQQCAPQCQQPSAPQCQQCQSACQSP 267
>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
protein W05B2.2 protein.
Length = 1278
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +1
Query: 346 CGRPTHATSSSTRSP--LKNLLAPTAIRSASNVSCPLPLQC 462
CG P SST+ P L + P S SCPL QC
Sbjct: 712 CGSPNFGVCSSTQHPMLLFSTQQPMTCTPNSQNSCPLGFQC 752
>Z81072-10|CAB03028.1| 423|Caenorhabditis elegans Hypothetical
protein F30A10.8b protein.
Length = 423
Score = 29.1 bits (62), Expect = 3.1
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Frame = -2
Query: 567 RAMERAMLGVSLRDQIRNEEIRRKTMVT-------DIAQRIATLKWQWAGHIAR-GTDGR 412
RA++RA V L+ Q R E++ + + DI +R+ T+ + A ++AR G D
Sbjct: 111 RALKRAGRVVDLQVQYRREDMMHRENIVENVEWDDDIRERVRTIGLKLA-YVARAGIDAD 169
Query: 411 WGQKVLEWRPRTGRRSV 361
++LE R +GR S+
Sbjct: 170 AEGRILEMRSPSGRYSL 186
>Z81072-9|CAB03025.1| 440|Caenorhabditis elegans Hypothetical
protein F30A10.8a protein.
Length = 440
Score = 29.1 bits (62), Expect = 3.1
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Frame = -2
Query: 567 RAMERAMLGVSLRDQIRNEEIRRKTMVT-------DIAQRIATLKWQWAGHIAR-GTDGR 412
RA++RA V L+ Q R E++ + + DI +R+ T+ + A ++AR G D
Sbjct: 111 RALKRAGRVVDLQVQYRREDMMHRENIVENVEWDDDIRERVRTIGLKLA-YVARAGIDAD 169
Query: 411 WGQKVLEWRPRTGRRSV 361
++LE R +GR S+
Sbjct: 170 AEGRILEMRSPSGRYSL 186
>AF273774-1|AAG15123.1| 433|Caenorhabditis elegans nuclear receptor
NHR-28 protein.
Length = 433
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 141 SSCLVCGRVGDAAYFYGNSC 82
S C VCG GD A+F +C
Sbjct: 2 SPCSVCGEAGDGAHFGAEAC 21
>Z29094-8|CAA82337.1| 254|Caenorhabditis elegans Hypothetical
protein C07A9.10 protein.
Length = 254
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
Frame = -2
Query: 372 RRSVGRPPTRWADNLLRFAGIR---------WMQAAQGRSLWRGL 265
+R VG+PP RW D+L + R W A+ R W+ +
Sbjct: 14 KRPVGKPPMRWTDSLRKEITTRDMGNNIITPWSTQAKDRKAWKAV 58
>U61947-14|ABA29341.1| 413|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 105, isoform b protein.
Length = 413
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -2
Query: 135 CLVCGRVGDAAYFYG-NSCL 79
CLVCGRV + + YG +CL
Sbjct: 38 CLVCGRVANTGHHYGVTACL 57
>U61947-13|AAB03131.3| 429|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 105, isoform a protein.
Length = 429
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -2
Query: 135 CLVCGRVGDAAYFYG-NSCL 79
CLVCGRV + + YG +CL
Sbjct: 38 CLVCGRVANTGHHYGVTACL 57
>AY204189-1|AAO39193.1| 429|Caenorhabditis elegans nuclear receptor
NHR-105 protein.
Length = 429
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -2
Query: 135 CLVCGRVGDAAYFYG-NSCL 79
CLVCGRV + + YG +CL
Sbjct: 38 CLVCGRVANTGHHYGVTACL 57
>AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical
protein Y73F8A.9 protein.
Length = 419
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +3
Query: 333 CRPTLWEAYPRYVFQYAVATQEPSGPNGHPFREQCVLPTATSVSQSFGLCRLP 491
C+ T +A P+ V Q A Q+PS P + C Q C LP
Sbjct: 232 CQTTCQQAAPQCVQQCAPQCQQPSAPQCQQCQNTCQQYAPVCQQQCAPQCTLP 284
>AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical
protein Y73F8A.8 protein.
Length = 420
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +3
Query: 333 CRPTLWEAYPRYVFQYAVATQEPSGPNGHPFREQCVLPTATSVSQSFGLCRLP 491
C+ T +A P+ V Q A Q+PS P + C Q C LP
Sbjct: 233 CQTTCQQAAPQCVQQCAPQCQQPSAPQCQQCQNTCQQYAPVCQQQCAPQCTLP 285
>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
protein H11E01.3 protein.
Length = 1464
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -1
Query: 592 YEKAQGHPKSNGEGYARSFPARSNQK*GDSQENHGNRHSPKDCDTEVA 449
+E+AQ P ++ E ARS S+ DS+ +HSP E A
Sbjct: 802 HEEAQDSPVASQEKAARSPSVHSSHASEDSEHRQEIQHSPAASQNEAA 849
>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
Length = 1666
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/62 (35%), Positives = 28/62 (45%)
Frame = +1
Query: 340 PPCGRPTHATSSSTRSPLKNLLAPTAIRSASNVSCPLPLQCRNPLGYVGYHGFPANLLIS 519
P P+ ++ SP+ NL PT SASN+ P P RN G VGY A
Sbjct: 1223 PSAQSPSALRKAAAASPVSNLYRPT---SASNLFAP-P---RNSGGLVGYSSNAARESTQ 1275
Query: 520 DL 525
D+
Sbjct: 1276 DI 1277
>AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical
protein W03F11.6b protein.
Length = 678
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/62 (35%), Positives = 28/62 (45%)
Frame = +1
Query: 340 PPCGRPTHATSSSTRSPLKNLLAPTAIRSASNVSCPLPLQCRNPLGYVGYHGFPANLLIS 519
P P+ ++ SP+ NL PT SASN+ P P RN G VGY A
Sbjct: 241 PSAQSPSALRKAAAASPVSNLYRPT---SASNLFAP-P---RNSGGLVGYSSNAARESTQ 293
Query: 520 DL 525
D+
Sbjct: 294 DI 295
>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
protein W03F11.6c protein.
Length = 1419
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/62 (35%), Positives = 28/62 (45%)
Frame = +1
Query: 340 PPCGRPTHATSSSTRSPLKNLLAPTAIRSASNVSCPLPLQCRNPLGYVGYHGFPANLLIS 519
P P+ ++ SP+ NL PT SASN+ P P RN G VGY A
Sbjct: 1221 PSAQSPSALRKAAAASPVSNLYRPT---SASNLFAP-P---RNSGGLVGYSSNAARESTQ 1273
Query: 520 DL 525
D+
Sbjct: 1274 DI 1275
>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
protein W03F11.6a protein.
Length = 1658
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/62 (35%), Positives = 28/62 (45%)
Frame = +1
Query: 340 PPCGRPTHATSSSTRSPLKNLLAPTAIRSASNVSCPLPLQCRNPLGYVGYHGFPANLLIS 519
P P+ ++ SP+ NL PT SASN+ P P RN G VGY A
Sbjct: 1221 PSAQSPSALRKAAAASPVSNLYRPT---SASNLFAP-P---RNSGGLVGYSSNAARESTQ 1273
Query: 520 DL 525
D+
Sbjct: 1274 DI 1275
>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
protein C56C10.12 protein.
Length = 1599
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -2
Query: 375 GRRSVGRPPTRWADNLLR--FAGIRWMQAAQGRSLW 274
G+ + PP A+ L R +G+ W A G +LW
Sbjct: 810 GKWLINNPPEHGANRLARRVLSGLHWGLAVDGHNLW 845
>AF038623-7|AAB94157.1| 338|Caenorhabditis elegans Seven tm
receptor protein 161 protein.
Length = 338
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 469 PLGYVGYHGFPANLLISDLISQGNSEHS 552
P + +GF + L I DLIS G SE+S
Sbjct: 214 PFCIIILYGFKSYLKIKDLISHGESEYS 241
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,418,369
Number of Sequences: 27780
Number of extensions: 463053
Number of successful extensions: 1465
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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