Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19i21
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    27   0.22 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    27   0.22 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   6.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   6.3  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   8.3  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   8.3  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -2

Query: 534 LRDQIRNEEIRRKTMVTDIAQRIATLKWQWAGHIA 430
           L+D ++    RR   ++D  + I +++W+ AG +A
Sbjct: 180 LKDPVKEFWERRTLQISDGIENIGSIRWELAGTLA 214


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -2

Query: 534 LRDQIRNEEIRRKTMVTDIAQRIATLKWQWAGHIA 430
           L+D ++    RR   ++D  + I +++W+ AG +A
Sbjct: 233 LKDPVKEFWERRTLQISDGIENIGSIRWELAGTLA 267


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 334  VGPPCGRPTHATSSS 378
            +GPP G PT+A++ S
Sbjct: 1759 MGPPVGHPTNASAHS 1773



 Score = 22.6 bits (46), Expect = 3.6
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -3

Query: 344  GGPTTY*GSRGSAGCRQHRAGLCGEAWGRPMSSSGRP 234
            G P  + GSRGS G R       G A   P+S S  P
Sbjct: 1828 GAPYDHYGSRGSVGRRS-----VGSARNIPVSGSPEP 1859


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 339 PTLWEAYPRYVFQYAV 386
           P ++E YP Y F  +V
Sbjct: 160 PAIYEIYPNYFFDSSV 175


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 339 PTLWEAYPRYVFQYAV 386
           P ++E YP Y F  +V
Sbjct: 160 PAIYEIYPNYFFDSSV 175


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
          phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 57 EYQLSQFLNRNY 92
          EYQL QFL   Y
Sbjct: 49 EYQLGQFLRERY 60


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
          precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 57 EYQLSQFLNRNY 92
          EYQL QFL   Y
Sbjct: 64 EYQLGQFLRERY 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,248
Number of Sequences: 438
Number of extensions: 5634
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)