Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19i19
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.59 
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    26   5.5  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   7.2  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       25   9.5  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    25   9.5  

>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 626 FLHAIFLHHQVFLSPSKLYVIKLVYLHYIPLPFL 525
           F++   L+HQ+ LS S  ++  L+  H++   FL
Sbjct: 154 FINFFLLYHQIILSHSLFHISHLISFHFLFFSFL 187


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 225 FFLIHIGGEYL*CKHNFKIILSIFVSKFII-CFNSKQIF 112
           FF +H    YL  K+ F+ +  I + KF   CFNSKQ F
Sbjct: 324 FFWLH---SYLMKKYPFRRVPLIPLKKFHSKCFNSKQFF 359


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 587 SPSKLYVIKLVYLHYIPLPFLYRLRTYNEFF*LFL 483
           SPS   + K+V+L  + L F+     Y+ F  +FL
Sbjct: 135 SPSSFLLGKIVFLILVDLNFIISQSCYDSFLPIFL 169


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 572 YVIKLVYLHYIPLPFLYRLRTYNEFF*LFLP*DMIFQHLV 453
           Y+   + ++Y+PL  +YR  T+  FF  F P   IF+++V
Sbjct: 46  YLTNGLTVYYVPLHTVYRETTFPSFF-SFFP---IFRNIV 81


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
 Frame = +2

Query: 323 LETMKRKTCLIETFESCENYDKKHRNIQSG------TATMYKNTIWYHTLLDAEKSCLKE 484
           L+T   K CL   F + +  D  H  I +       + T  +  +W     D   S LK 
Sbjct: 473 LDTRMYKVCL--NFTTTQK-DINHATISNSGILVTSSGTDNQTFVWDSRKPDKPLSLLKH 529

Query: 485 EKVKKIHYKFEDGREMVEEYNVDTQVLLRRAWKVKGKL----GGEG---KWHVEIGDP 637
            K K IH+   DG     E  VD  + + + W+ KG L    G +G    W + + +P
Sbjct: 530 GKTKMIHF---DG---ANEEEVDAGINMAQ-WQPKGNLFVTGGSDGIVKVWDLRLNNP 580


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,734
Number of Sequences: 5004
Number of extensions: 47096
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)