Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19i19
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727 31 0.80
06_03_0832 + 25190755-25190960,25191869-25191997,25192079-251923... 30 1.9
05_05_0179 + 23022985-23023190,23024099-23024227,23024309-230245... 30 1.9
03_02_0226 - 6569657-6570388,6570461-6570748,6570846-6571303,657... 30 1.9
05_04_0036 + 17386160-17386318,17386588-17386651,17387089-173871... 29 2.4
07_01_0877 - 7276300-7276967,7277050-7277173 29 3.2
11_03_0021 + 9010846-9011672,9011753-9013700 29 4.3
02_04_0003 + 18832467-18832543,18832627-18832849,18832985-188333... 29 4.3
08_01_0189 + 1578935-1578950,1579227-1579390,1579493-1579605,157... 27 9.9
03_05_1130 + 30602452-30602712,30603033-30603950,30605501-306055... 27 9.9
>04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727
Length = 706
Score = 31.1 bits (67), Expect = 0.80
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 356 ETFESCENYDKKHRNIQSGTATMYKNTIWYHTLLDAEKSCLKEEKVKKIHYKFEDGREMV 535
E + N+DK Q G T+YK T+ + L+ ++ L +E+ KK E G+EM+
Sbjct: 366 ELIHATNNFDKSRIIGQGGHGTVYKGTVKDNMLVAIKRCALVDERQKK-----EFGQEML 420
>06_03_0832 +
25190755-25190960,25191869-25191997,25192079-25192301,
25192447-25192702,25193228-25193685,25193783-25194070,
25194143-25194874
Length = 763
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +2
Query: 527 EMVEEYNVDTQVLLRRAWKVKGK 595
+++E+YN+++ V LRR W +K K
Sbjct: 338 DLMEQYNLESSVYLRRMWDMKKK 360
>05_05_0179 +
23022985-23023190,23024099-23024227,23024309-23024531,
23024674-23024929,23025455-23025912,23026009-23026296,
23026369-23027100
Length = 763
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +2
Query: 527 EMVEEYNVDTQVLLRRAWKVKGK 595
+++E+YN+++ V LRR W +K K
Sbjct: 338 DLMEQYNLESSVYLRRMWDMKKK 360
>03_02_0226 -
6569657-6570388,6570461-6570748,6570846-6571303,
6571694-6571828,6571829-6572084,6572229-6572451,
6572533-6572661,6573570-6573775
Length = 808
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +2
Query: 527 EMVEEYNVDTQVLLRRAWKVKGK 595
+++E+YN+++ V LRR W +K K
Sbjct: 383 DLMEQYNLESSVYLRRMWDMKKK 405
>05_04_0036 +
17386160-17386318,17386588-17386651,17387089-17387147,
17387268-17387343,17387521-17387592,17387786-17387873,
17387992-17388250,17388446-17388561,17388876-17389096,
17389196-17389224,17389285-17389420,17389567-17389651,
17389735-17389963
Length = 530
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 380 YDKKHRNIQSGTATMYKNTIWYHTLLDAEKSCLKEEKVKKIHY 508
Y +KH+ Q G M ++W++ L ++ + E+VK Y
Sbjct: 254 YREKHQAAQKGVVGMNIYSMWFYPLTESTEDIAATERVKDFMY 296
>07_01_0877 - 7276300-7276967,7277050-7277173
Length = 263
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 488 KVKKIHYKFEDGREMVEEYNVDTQVLLRRAWKVKGKLGGEGKWHVEI 628
++K I ED + E Y +D V+ RR+ + +LG K E+
Sbjct: 97 EIKDIKKLLEDASKRRERYKIDDAVIARRSESIDPRLGAMYKKETEL 143
>11_03_0021 + 9010846-9011672,9011753-9013700
Length = 924
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +2
Query: 449 TLLDAEKSCLKEEKVKKIHYKFEDGREMVEEYNVDTQVLLR 571
T++D K +EK++++ +F D ++V N+ + +R
Sbjct: 518 TIIDGHKCSSLQEKIRRVSLQFNDSEDVVVPTNITNRSCVR 558
>02_04_0003 +
18832467-18832543,18832627-18832849,18832985-18833375,
18833766-18834223,18834320-18834607,18834679-18835398
Length = 718
Score = 28.7 bits (61), Expect = 4.3
Identities = 8/22 (36%), Positives = 18/22 (81%)
Frame = +2
Query: 524 REMVEEYNVDTQVLLRRAWKVK 589
++++E+YN+++ V LRR W ++
Sbjct: 296 KDLMEQYNLESSVYLRRMWGIR 317
>08_01_0189 +
1578935-1578950,1579227-1579390,1579493-1579605,
1579850-1580399,1580514-1580813,1581093-1581133,
1581359-1581606,1581983-1582086,1582177-1582323
Length = 560
Score = 27.5 bits (58), Expect = 9.9
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +2
Query: 353 IETFESCENYDKKHRNIQSGTATMYKNTIW-YHTLLDAEKSCLKEEKVKKIHYK-FEDGR 526
+E+FE +YD K + Y I Y +A K LKE+++KK+ K E+G
Sbjct: 131 VESFEL--DYDGKRDRWNGYDPSTYTRVIADYEAREEARKKYLKEQQLKKLEEKDGEEGD 188
Query: 527 EMVEEYNVDTQ 559
E V D +
Sbjct: 189 ENVASEEEDEE 199
>03_05_1130 +
30602452-30602712,30603033-30603950,30605501-30605548,
30605629-30606072
Length = 556
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 125 LLKQIMNLDTNIDRIILKLCLHYKYSPP 208
+LKQI + D + R ++KL H+K+S P
Sbjct: 111 ILKQIADGDPDDSRCVVKLLDHFKHSGP 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,821,872
Number of Sequences: 37544
Number of extensions: 232669
Number of successful extensions: 503
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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