Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19i16
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    29   0.60 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   4.2  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   7.4  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    25   9.7  

>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = +3

Query: 138 INMTTKTEMHKTMAKGSSFGRPLQA*LTKR--IPD--SILDAFL-KYNYHHKITIKD 293
           I  TT  E  K + K ++F R  Q  L K   I D  SIL     KY  HH +TI D
Sbjct: 315 IGATTLAEYKKYIEKDAAFERRFQIILVKEPSIEDTISILRGLKEKYEVHHGVTISD 371


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 432  FLWGFNPIWVLTSITIAFHFVLS*FSLSRG--SIFSPSAQSLPAKV 563
            F WG+    VL    I FH VLS  +   G  ++  P   ++P ++
Sbjct: 4104 FTWGYYIASVLNCPDIVFHTVLSGRTYIEGAETVMGPCMNTIPVRI 4149


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 437 VGLQSYMGFNLHHNCFSFRSLLIFSF 514
           +G Q  +GF L  +C +F   L+F+F
Sbjct: 406 LGSQLSLGFQLITSCITFVDFLVFAF 431


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -3

Query: 623 DEHRAPKLASK*TFLQIRLRDLRRKRLCGGRKDATS*KRKSRENEMKSN 477
           +E + PKLAS    L+    DL+RK L   R+     ++ + E+E K++
Sbjct: 50  NETKNPKLASLEFQLENLKNDLKRKELEFEREQIELQRKLAEEHEQKNS 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,210
Number of Sequences: 5004
Number of extensions: 42948
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)