Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19i16
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    24   1.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.6  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   4.5  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   4.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.0  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 30  NYVNLYDMYQNHNKRMSVGIN 92
           NY N  + Y N+NK++   IN
Sbjct: 93  NYNNYNNNYNNYNKKLYYNIN 113


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 21  RCDNYVNLYDMYQNHNKRMSVGINRGDN 104
           RC N+ N  + + NHN   +   ++ DN
Sbjct: 413 RCANFDNQDNNHYNHNHNQARHSSKSDN 440


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 607 RSLRPSEPSYK*DLETFAGRDCAEGEKMLPLERENQERTK 488
           RS    + SYK + E    R+ ++G      ERE  + TK
Sbjct: 263 RSREREQNSYKNEREYRKYRETSKGRSRDRTERERSKETK 302


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 607 RSLRPSEPSYK*DLETFAGRDCAEGEKMLPLERENQERTK 488
           RS    + SYK + E    R+ ++G      ERE  + TK
Sbjct: 274 RSREREQNSYKNEREYRKYRETSKGRSRDRTERERSKETK 313


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 584 FLQIRLRDLRRKRLCGGRKDAT 519
           F  I+LR L +++LC  RK+ +
Sbjct: 67  FGAIQLRQLLKRQLCEKRKEVS 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,393
Number of Sequences: 438
Number of extensions: 3379
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)