Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19i15
         (292 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   1.7  
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    24   3.9  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    23   9.1  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    23   9.1  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   9.1  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    23   9.1  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    23   9.1  
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe...    23   9.1  

>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 160 HVSDEVFQRYVQDISAMYIFIKTVSLL 240
           H+S  +   Y  D+ A+YIF+  V  L
Sbjct: 481 HISLTLISNYTSDLRAVYIFVIVVMTL 507


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -3

Query: 191 TYLWNTSSDTCYQIQNQSLRRPRGFKL*DWNSNTAAGDWMGL 66
           TY  +++S+TC    N   ++     L  +N N    DW  +
Sbjct: 161 TYFGDSASETCSSASNSLYKQTDLTSLCMFNQNKIQTDWSSI 202


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 44  ITDVQLNKGPSNHQQQCSSSNL 109
           +TDV  N G  +HQ     SNL
Sbjct: 66  VTDVGANNGVIDHQASLELSNL 87


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 12   DSFVWDNGIITSQTCS*IKAHPI 80
            DSF+ DN ++ S     I  HP+
Sbjct: 2177 DSFIVDNSVLASAKSHCIVMHPL 2199


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 27  DNGIITSQTCS*IKAHPITSSSVRVPISQFETSGSTKRLVLY 152
           ++GI++S + S     P  S S+RVP    + + S K + ++
Sbjct: 527 NSGILSSSSLSTSFGCPSVSGSLRVPSYDMKINDSCKAIDIH 568


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 173 KCSKDMFKIFLPCTFS 220
           K  ++MF++FLP  FS
Sbjct: 768 KTDENMFEVFLPTAFS 783


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -2

Query: 291 FFFTLYFFINNNLNSFSKETDCLYENVHGRNILNISLEHFI 169
           F F +Y+FI +   +FS + + +  + +  +ILN +   F+
Sbjct: 8   FTFIVYYFIISFSYAFSIKQEIIVSSHNASSILNTTAFWFV 48


>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 63  IKAH--PITSSSVRVPISQFETSGSTKRLV 146
           ++AH  PI+  SV   +  F  +GST R+V
Sbjct: 379 LQAHDGPISCLSVNPSVPSFVATGSTDRVV 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,213,013
Number of Sequences: 5004
Number of extensions: 23667
Number of successful extensions: 64
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)