Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19i14
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    29   0.39 
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    26   3.7  
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom...    26   4.8  
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    25   8.5  
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual     25   8.5  

>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 586 LFILIAHYLEFNKIK*KVFNHYLRLFVDLFFNYFSEHLAGISFSDVFP 443
           L I + +YL    +K  +FN  L   +D+   +F E+ A   FS + P
Sbjct: 175 LTIALINYLISKSLKNSIFNPLLTWTLDISVVFFKEYFAYCKFSSLHP 222


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 461 FFRCVSITSVNRQVE*YSTRVSGKEHSRTELLVSNSLL 348
           F R +S+T++    E  S ++  K H R +LL  NS L
Sbjct: 55  FNRDLSVTAIRAWSETRSKKIVAKSHHRHQLLDQNSEL 92


>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 294 SKAEIILLINNTNIMANSEKGVGNQ 368
           SK ++ILL+NN   M+N E G   +
Sbjct: 263 SKDDVILLVNNMGGMSNLELGYATE 287


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 418 NSIAPESAGRNTVAPNSWFPTPFSEFAIMFVLFIKRI 308
           N+I  +S G       SWFP  +S     F+L   R+
Sbjct: 69  NNIIGKSLGTTNPGQLSWFPASYSLTVGTFILIAGRL 105


>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 212 GIKGLGAHTVQQSP*YIFQK*RSIRLGVESRDNSLNKQHKHYGEF 346
           GI+G     V   P Y  Q   S+  G+    NSLN+  + + +F
Sbjct: 144 GIRGCIGKVVMDQPRYATQTGVSMHEGLIENSNSLNQAVESHSKF 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,330
Number of Sequences: 5004
Number of extensions: 48717
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)