Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19i13
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF067609-10|AAC17537.1|  163|Caenorhabditis elegans Ground-like ...    28   5.5  
U80437-4|AAK68244.1|   90|Caenorhabditis elegans Neurabin protei...    27   9.7  

>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
           protein Y39D8B.1 protein.
          Length = 1372

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 122 LFSIMEKPTVTEQPPPYSAAVPPDFPPVTNLVELIFCQSNSK 247
           + S  E PTV+  PPP  + + P+FP + N+ +  F  S  K
Sbjct: 24  IISRREVPTVST-PPPQQSTLLPNFPWLENIPKFEFTTSKPK 64


>AF067609-10|AAC17537.1|  163|Caenorhabditis elegans Ground-like
           (grd related) protein20 protein.
          Length = 163

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 201 GGKSGGTAAEYGGGCSVTVGFSIILNN 121
           GG  GG     GGGC  T+G S+I  N
Sbjct: 30  GGCGGGCGGGGGGGCLPTLGCSVISFN 56


>U80437-4|AAK68244.1|   90|Caenorhabditis elegans Neurabin protein
           1, isoform c protein.
          Length = 90

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +2

Query: 143 PTVTEQPPPYSAAVPPDFPPVTNLVELIFCQSNSKSLMCFSIFYLFAG 286
           P +  QPPP     PP   P + + ++   + +  SL    + +LF+G
Sbjct: 38  PRLQRQPPPPLPPKPPSQCPPSPMSQVCVIKQSHGSLSLSLLLFLFSG 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,608,170
Number of Sequences: 27780
Number of extensions: 290195
Number of successful extensions: 920
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)