Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19i09
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    24   0.77 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   5.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   7.1  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 207 RAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESLDRL 362
           R V   + GFDP++    DE +E+  D +   +   +  G +I  L  L ++
Sbjct: 225 RMVDENINGFDPYVKTPNDEELEKPTDKRMFVLAASIKAGYTIDRLYELTKI 276


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 77  CILDEFPTHRILSMNLTF 24
           C LD  PT+ ++S +++F
Sbjct: 184 CALDLTPTYAVVSSSISF 201


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +2

Query: 383 RNITNAVNVLH 415
           +N+TN +NV+H
Sbjct: 30  KNLTNTLNVIH 40


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +1

Query: 280 VKTVSVTMLGWW*FVVTVL*CW 345
           ++ ++V  L +W F+V+ +  W
Sbjct: 385 IQCLTVVCLAFWSFIVSTILLW 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,806
Number of Sequences: 438
Number of extensions: 2645
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)