Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19i06
(610 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 52 5e-08
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 49 5e-07
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 40 2e-04
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 36 0.004
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 36 0.005
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc... 32 0.057
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 6.5
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ... 25 6.5
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 25 6.5
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 52.4 bits (120), Expect = 5e-08
Identities = 28/101 (27%), Positives = 56/101 (55%)
Frame = +1
Query: 295 STLGREEILKLIPGCSALVWISNLPITNEILDAAGAQLKIVSTVSAGYNHCNPEELRARG 474
+++ +++++ I G A+ S +T +L+AA + L ++ G N + + RG
Sbjct: 84 TSMSEDDLVEKIKGVHAIGIRSKTRLTRRVLEAADS-LIVIGCFCIGTNQVDLDFAAERG 142
Query: 475 IQLTNTPNVLSPAVAEVAVGLILSASRRFTENLDQVRRGEW 597
I + N+P S +VAE+ +G I+S +R+ + ++ RGEW
Sbjct: 143 IAVFNSPYANSRSVAELVIGYIISLARQVGDRSLELHRGEW 183
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 49.2 bits (112), Expect = 5e-07
Identities = 22/73 (30%), Positives = 39/73 (53%)
Frame = +1
Query: 379 EILDAAGAQLKIVSTVSAGYNHCNPEELRARGIQLTNTPNVLSPAVAEVAVGLILSASRR 558
EI+D +K + + AGY + ARGIQ+++ P + A A+V + L+L A R
Sbjct: 72 EIIDNLPPSVKFICHLGAGYETVDVAACTARGIQVSHVPKAVDDATADVGIFLMLGALRG 131
Query: 559 FTENLDQVRRGEW 597
F + + ++ + W
Sbjct: 132 FNQGIFELHKNNW 144
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 40.3 bits (90), Expect = 2e-04
Identities = 22/77 (28%), Positives = 36/77 (46%)
Frame = +1
Query: 367 PITNEILDAAGAQLKIVSTVSAGYNHCNPEELRARGIQLTNTPNVLSPAVAEVAVGLILS 546
P T E+L K+ T +AGYN+ + + G+ + NTPN + A + + L +
Sbjct: 71 PFTEEMLGPLLPTCKLFVTGAAGYNNVDVDWATRNGVYVANTPNGPTEGTANMNLMLFMC 130
Query: 547 ASRRFTENLDQVRRGEW 597
R E +R G+W
Sbjct: 131 TLRGAREAEQSLRLGKW 147
>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 36.3 bits (80), Expect = 0.004
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +1
Query: 406 LKIVSTVSAGYNHCNPEELRARGIQLTNTPNVLSPAVAEVAVGLILSASRRFTENLDQVR 585
+K+V+ GYN+ N + I + + P+ AV+E VGL+LS +R+ +VR
Sbjct: 69 VKLVALRCGGYNNVNLKAASEYKITVVHVPSYSPFAVSEFTVGLLLSLNRKIHRAYVRVR 128
Query: 586 RGEWEI 603
++ I
Sbjct: 129 EDDFNI 134
>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 35.9 bits (79), Expect = 0.005
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = +1
Query: 409 KIVSTVSAGYNHCNPEELRARGIQLTNTPNVLSPAVAEVAVGLILSASRRFTENLDQVRR 588
K+++ AG+N+ + + GI + P AVAE +GL+LS +R+ +VR
Sbjct: 70 KLIALRCAGFNNVDLKAAADNGITVVRVPAYSPYAVAEYTIGLLLSLNRKIHRAYVRVRE 129
Query: 589 GEWEI 603
++ +
Sbjct: 130 DDFNL 134
>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 32.3 bits (70), Expect = 0.057
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 373 TNEILDAAGAQLKIVSTVSAGYNHCNPE 456
T E+L A ++LK++ T + NHCNPE
Sbjct: 125 TLELLHAKESELKLLKTQLSNLNHCNPE 152
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 199 VSSNDYPPTALKLLEDHFTVLQSRYLNFGQEGSTLGREEILKLIPGCSA 345
+SSND P T L + + F+ LQ +G E G + LI C+A
Sbjct: 929 LSSNDQPSTGLYPILNMFSRLQYAQ-PYGNENEWTGLSQFEPLIFKCTA 976
>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 318
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +1
Query: 382 ILDAAGAQLKIVSTVSAGYNHCNPEELRARGIQLTNTPNVLSPAVAEVAVGLILSASRRF 561
+L A IVS + G + C + + + NT LSP AE I+S+ F
Sbjct: 55 LLKARRMTATIVSNHNVGCSCCYFRQYSTKQFRDLNTSEALSPCKAEPIPYKIMSSMSNF 114
Query: 562 TE 567
++
Sbjct: 115 SD 116
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 409 KIVSTVSAG-YNHCNPEELRARGIQLTNTPNVLS 507
KI+S + G N +L ARGI + NT NV++
Sbjct: 478 KIISRFATGDLNLLVCSDLMARGIDVANTQNVIN 511
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,438
Number of Sequences: 5004
Number of extensions: 50219
Number of successful extensions: 147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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