Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19i04
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    34   0.024
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    31   0.17 
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    30   0.29 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.1  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    27   2.7  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    27   3.6  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    26   6.3  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    26   6.3  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    25   8.3  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   8.3  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   8.3  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   8.3  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 33.9 bits (74), Expect = 0.024
 Identities = 23/60 (38%), Positives = 32/60 (53%)
 Frame = +1

Query: 271  LLTDVLNLRWMEFLKKIIKEARMLENYEMSYENIELSVNFKLNVDHLNINDVSHYAKDIL 450
            LLTD+L       L   I   R++  +E S EN  L +NF + + HLNI  V+H   D+L
Sbjct: 1413 LLTDLLAA-----LTPRIDHPRVIRIFEKS-ENTPLILNFMVAIQHLNIQAVNHAYNDLL 1466


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -1

Query: 258 VVHFSSKL-VFFFCCFE-YFNALAKHPNYKNVSKY 160
           + +FS  L +    CF+ ++ +  KHPNYKN+ KY
Sbjct: 60  IFYFSVILSILTIACFKIHYVSSPKHPNYKNIEKY 94


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +1

Query: 304  EFLKKIIKEARMLENYEMSYENIELSVNFKLNVDHLNINDVSHYAKDILKFNH 462
            E  + ++ +   LENY+  YE ++L +    +VD  N  ++S   +D L FNH
Sbjct: 1155 EIHENLLLKVSDLENYKKKYEGLQLDLEGLKDVD-TNFQELSKKHRD-LTFNH 1205


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 388  FKLNVDHLNINDVSHYAKDILKFNHCTSATEFDFSI 495
            +KLNV+H  I     Y    + FN C + +EF+FS+
Sbjct: 1180 YKLNVEHKIIT----YQNYEMTFNDCDAFSEFNFSL 1211


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 202 IKIFETAKEEYKF*RKMDNVTKQLLTDVLNLR-WMEFLKKIIK 327
           + +F  A+ +Y F   +DN  K +L D   LR W+  L+K+ K
Sbjct: 114 LTLFAIAQGQYLFPESVDNGQKHVLNDSGLLRWWVNCLEKLRK 156


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 316 KIIKEARMLENYEMSYENIELSVNFKLNVDHLNI 417
           K  KEA +++NYE++ E  + +++F  N  + N+
Sbjct: 7   KAAKEALVVKNYELAIEQSKKALSFDANNYNANV 40


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 295 RWMEFLKKIIKEARMLENYEMSYENIELSVNFKLNVDHLNI 417
           R  + L  +  E  +L+  E+S+E+I   +   LN DHLNI
Sbjct: 436 RHAKLLDALAGEIALLQ--ELSHEHIVQYLGSNLNSDHLNI 474


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = +1

Query: 304 EFLKKIIKEARMLENYEMSYEN--IELSVNFKLNVDHLNIND--VSHYAKDI 447
           +FLK ++  +  LE  E SY++  +     +K+N+  L I D  VS+  KD+
Sbjct: 338 QFLKDLLSASPYLEYLEASYQSDLVAAIKKYKINLRSLIIIDEGVSNTVKDL 389


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +1

Query: 298 WMEFLKKIIKEARMLENYEMSYENIELSVNFKLNVDHLNINDVSHYAKDILK 453
           W E+  K++ +  +++  ++ Y NIE     +LN     I+ + H  +D LK
Sbjct: 77  WKEYAIKVLDKKYIVKENKVKYVNIERDSMMRLN-GFPGISRLFHTFQDDLK 127


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +3

Query: 207 NIRNSKRRIQVLKKNGQRYKTVADRRI-KSPLDGIP 311
           N  NSK  IQ LKKNG  +  +      K    GIP
Sbjct: 183 NENNSKSWIQYLKKNGANFNLIQTPNFQKLVQSGIP 218


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 385  NFKLNVDHLNINDVSHYAKDILKFNHCTSATEFDFSI 495
            +F+L +  L+ ND  +   +IL         EFD+S+
Sbjct: 1011 DFELALSRLSTNDADYAILNILNLLTSNECDEFDYSV 1047


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -2

Query: 332 ASFIIFLRNSIQRRFNTSVSNCFVTLSIFLQNLYSSFAVSNILMH 198
           A+F  +L + I R+F   +S+ F+     ++NL  SF  ++ + H
Sbjct: 851 ATFQKYLSSFINRKFGVLLSSSFIQQLNTVENLNLSFNSTDAVYH 895


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,425
Number of Sequences: 5004
Number of extensions: 62731
Number of successful extensions: 184
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)