Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19i04
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.7  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   2.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.0  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 488 FQYQNLMWISVKPERSLTLV 547
           F+YQ +  +  KP RS TLV
Sbjct: 539 FKYQGITILEKKPSRSSTLV 558


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 301 MEFLKKIIKEARMLENYEMSYENIELSVNFKLNVDHLNINDVSHYAKD 444
           M   ++II   ++ E    ++EN++     KL  + + I DV   AKD
Sbjct: 39  MYVYEEIINGKKLTEIINETHENVKYLPGHKLPPNIIAIPDVVEAAKD 86


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +3

Query: 318 NYKGSSDVGKL*NVLRKYRIKRQLQVKCRPFEHK*CESLCEGYIEIQSLHV 470
           ++  +S  G +  +L   ++ ++  ++ R FE K  + L EG+ + Q +HV
Sbjct: 229 SHSNASVAGGMEMILLCEKVAKE-DIQVRFFEEKDGQVLWEGFGDFQPVHV 278


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +3

Query: 318 NYKGSSDVGKL*NVLRKYRIKRQLQVKCRPFEHK*CESLCEGYIEIQSLHV 470
           ++  +S  G +  +L   ++ ++  ++ R FE K  + L EG+ + Q +HV
Sbjct: 229 SHSNASVAGGMEMILLCEKVAKE-DIQVRFFEEKDGQVLWEGFGDFQPVHV 278


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +1

Query: 244 RKMDNVTKQLLTDVLNLR---WMEFLKKIIKEARMLENYEMSYE 366
           R++++  K  +  ++ L+   W +  KK      +L ++E  YE
Sbjct: 730 RQVNSAVKSTIQSLMKLKSPEWKDLAKKARSVNHLLTHHEYDYE 773


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 15/52 (28%), Positives = 19/52 (36%)
 Frame = +2

Query: 104 YTEYGSCSGNQLRFYNIN*YFDTFL*FGCFASALKYSKQQKKNTSFEEKWTT 259
           Y+ +GS SG      N    FD +    C       SKQ     +F   W T
Sbjct: 132 YSVFGSISGMGQAMTNAAIAFDRYRTISCPIDGRLNSKQAAVIIAFTWFWVT 183


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 15/52 (28%), Positives = 19/52 (36%)
 Frame = +2

Query: 104 YTEYGSCSGNQLRFYNIN*YFDTFL*FGCFASALKYSKQQKKNTSFEEKWTT 259
           Y+ +GS SG      N    FD +    C       SKQ     +F   W T
Sbjct: 132 YSVFGSISGMGQAMTNAAIAFDRYRTISCPIDGRLNSKQAAVIIAFTWFWVT 183


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 433 YAKDILKFNHCTSATEFDFSIPEFNVD 513
           Y +DI+      +  +F  SI  +NVD
Sbjct: 48  YDRDIIPEQKNATKIDFGLSIQHYNVD 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,976
Number of Sequences: 438
Number of extensions: 4121
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)