Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19h23
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    27   0.93 
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    26   1.2  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     25   3.8  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   3.8  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    25   3.8  
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al...    24   5.0  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    24   5.0  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   5.0  
SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit ...    24   6.6  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    24   6.6  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    23   8.7  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    23   8.7  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    23   8.7  

>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 202 IAKHPLSKLVSWLPYFKNTFVKPFTDSPDYSFTTDEYL 315
           IA  PLS    +L Y KN F+  F    + S +TD+ L
Sbjct: 645 IAMSPLSNNALFLAYDKNPFLTYFKRGLNVSLSTDDPL 682


>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 79  TAVAANFVSNLEELCQERGSEKLRLPDALVLEAPFNNLKDEIAKHPL 219
           T V+  F+  L+   +E+  EK+   D   +   F  LKDE    PL
Sbjct: 465 TKVSKTFLKKLDAFHEEKLREKINSSDKGDVSYEFELLKDETVFSPL 511


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 211 HPLSKLVSWLP-YFKNTFVKPFTDSPDYSFTTDEY 312
           H L+   S L    +NTFVK   ++ D S T D++
Sbjct: 578 HELTPFASQLAKQLRNTFVKLMQETMDESTTVDDF 612


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 208  KHPLSKLVSWLPYFKNTFVKPFTDSPDYSF-TTDEY 312
            K  L  + SWL  F + F + F D   + F  TDEY
Sbjct: 1042 KRELKMVYSWLQLFYD-FFRNFQDIAPFDFLNTDEY 1076


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 61  FLIRLGTAVAANFVSNLEELCQERGSEKLRLPDALVL 171
           +L+ L   V+A  V +   LC  RGS   +    ++L
Sbjct: 376 YLLALNNLVSAGIVQDYPPLCDIRGSYTAQFEHTIIL 412


>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
           1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 250 KNTFVKPFTDSPDYSFTTDEY 312
           K TF++ +TD   Y +  DEY
Sbjct: 51  KKTFIESWTDYETYGWGKDEY 71


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 145 LRLPDALVLEAPFNNLKDEIAKHPLSK-LVSWLPYFKNTFVK 267
           LRLPD+      +++ + ++ K  LS+ L+ +  YF    +K
Sbjct: 413 LRLPDSQTFVQLYSSTESDLLKEGLSRILLYFFTYFPENILK 454


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 7   SVTCGRNLNIEFRSIVDNFLIRLGTAVAANFVSNLE 114
           SV  G  L ++  +I  N  + +     +NF SNLE
Sbjct: 646 SVDLGETLEVDLENIAKNSPLLVFEDFGSNFESNLE 681


>SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit
           Orc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 264

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 20  GETSTLSSVRSWTIFSSD*EL--LSRQISYPTWKSCVKREAQ 139
           G  S    ++ W+  +S  ++    R  +YP WK+C++   Q
Sbjct: 210 GYESQKQRIKPWSGIASMIQIDYEKRLQNYPIWKACIEERIQ 251


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 2   VAALHAGETSTLSSVRSWTI 61
           +  +H G+TSTLS  RS +I
Sbjct: 322 IRTIHRGKTSTLSGNRSHSI 341


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 231 FLAALLQEYVRKTVHRFSRLFF 296
           +LAA+L   + K V RF+RL F
Sbjct: 556 YLAAVLASALTKLVMRFARLSF 577


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = +1

Query: 115  ELCQERGSEKLRLPDALVLEAPFNNLK----DEIAKHPLSKLVSW 237
            E+     S  L L D L+   P N L     +EI  HP  K V+W
Sbjct: 919  EVFTAESSVALDLIDRLLCMNPANRLGANGVEEIKAHPFFKSVNW 963


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 250 KNTFVKPFTDSPDYSFTTDEYL 315
           K  FV P  D P+    T EYL
Sbjct: 227 KEAFVPPKFDQPERDAATSEYL 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,012
Number of Sequences: 5004
Number of extensions: 25232
Number of successful extensions: 88
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)