Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19h23
(320 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0445 + 17989438-17990895 30 0.35
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281... 29 0.81
08_02_0817 + 21516306-21516584,21517515-21517601,21517705-215178... 27 2.5
06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053 27 2.5
02_01_0519 - 3748415-3748432,3749010-3749041,3749474-3749606,374... 27 4.3
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 26 5.7
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 26 5.7
04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148... 26 5.7
10_05_0076 + 8872765-8872932,8874727-8874822,8875843-8875955,887... 26 7.6
05_03_0110 + 8500204-8500460,8502544-8502612,8502725-8502790,850... 26 7.6
04_04_0173 - 23294511-23294601,23294719-23294849,23295160-232954... 26 7.6
04_03_1013 - 21714804-21714896,21715202-21715241,21715629-217156... 26 7.6
>10_08_0445 + 17989438-17990895
Length = 485
Score = 30.3 bits (65), Expect = 0.35
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 241 AARKPVSIEDVWRFRPSNY*REPPRPAHQEASVSLSLSLDTALP 110
A +KPV +ED WR PS++ E P + A ++L+ T P
Sbjct: 295 AVKKPVVVEDPWRPPPSSWTIEAPADGDKWA-ITLATDFSTPKP 337
>03_01_0360 +
2815067-2816033,2816120-2816198,2816275-2816342,
2817382-2817464,2821566-2823083
Length = 904
Score = 29.1 bits (62), Expect = 0.81
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -2
Query: 175 PPRPAHQEASVSLSLSLDTALPSWIRNLPR 86
PP+P AS S S D A+P+W+R LPR
Sbjct: 2 PPQPP-PAASASASAP-DPAVPAWLRGLPR 29
>08_02_0817 +
21516306-21516584,21517515-21517601,21517705-21517848,
21517937-21518029,21518156-21518407
Length = 284
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 238 LPYFKNTFVKPFTDSPDYSFTTDEYLA 318
+P+F F PFT +P Y+FTT+ Y A
Sbjct: 103 IPFFP--FRVPFTLAPPYNFTTELYSA 127
>06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053
Length = 1613
Score = 27.5 bits (58), Expect = 2.5
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Frame = +1
Query: 22 RNLNIEFRSIVDNF------LIRLGTAVAANFVSNLEELCQERGSEKLRLPDALVLEAPF 183
+ LN+ FR + +N+ L++L ++ + + L+E E L AL+ E+P
Sbjct: 735 QKLNVLFRGVEENWNAFLQSLVKLTGSLRSLSIHILDEKEHSSSLEYL----ALIAESPP 790
Query: 184 NNLKDEIAKHPLSKLVSWLPYFKNTFVKPFTDS 282
+++ K L +L W+P +N F D+
Sbjct: 791 LFIRNFSLKGKLQRLPPWIPSLRNVSRITFRDT 823
>02_01_0519 -
3748415-3748432,3749010-3749041,3749474-3749606,
3749702-3749765,3749948-3750010,3750101-3750243,
3750358-3750495,3750570-3750691,3750798-3750963,
3751058-3751180,3751325-3751396,3751484-3751591,
3752730-3752846,3752953-3753040,3753162-3753253,
3753378-3753490,3753994-3754127,3754209-3754564,
3754649-3754861
Length = 764
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 102 IQLGRAVSRERLRETEAS*CAGLGGSLQ*FEGRNRQTSS 218
+ + RAV RE +++ + S GLGG L ++GR R +S
Sbjct: 78 VGINRAVIRELVKQQKDS---GLGGRLPAYDGRKRLYTS 113
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 109 LEELCQERGSEKLRLPDALVLEAPFNNLKDEIA 207
L LC GS+ R AL L F+ DE+A
Sbjct: 580 LVRLCSSSGSKMARFMSALALAYMFDGRMDEVA 612
>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 26.2 bits (55), Expect = 5.7
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 180 GSLQDQRIRKPQFL*ASLLTQLFQVGYEICRDSSS*SDEKIVHDRTE 40
G L+DQ + PQ + AS +Q + SSS DE + TE
Sbjct: 1481 GELRDQLAKSPQKILASAFSQFYSQTEAAGNQSSSVKDEGLTGAITE 1527
>04_04_1192 +
31611804-31612113,31612235-31614058,31614098-31614842,
31615047-31616835,31617136-31617163,31617343-31617794
Length = 1715
Score = 26.2 bits (55), Expect = 5.7
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 82 AVAANFVSNLEELCQERGSEKLRLPDALVLEAPFNNLKDEIAK 210
++A +FV ++RG +L DA V+ PF N KD+I++
Sbjct: 146 SMAVDFVMAHAGSKRKRGQYELAQDDATVVVVPFEN-KDDISR 187
>10_05_0076 +
8872765-8872932,8874727-8874822,8875843-8875955,
8876078-8876144,8876246-8876338,8876496-8876648,
8876761-8876849,8876976-8877081,8877178-8877265,
8877375-8877493,8877626-8877787,8877917-8878113,
8878229-8878317,8878409-8878518,8878622-8878735,
8878990-8879097,8879182-8879784
Length = 824
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 115 LPSWIRNLPRQQFLI**ENCPRSN 44
LP+W+R++P+ QF + N P N
Sbjct: 128 LPAWLRDIPQMQFRM--HNAPFEN 149
>05_03_0110 +
8500204-8500460,8502544-8502612,8502725-8502790,
8502885-8502963,8504270-8504390,8504486-8504581,
8505403-8505515,8505612-8505689,8507777-8507893,
8508194-8508293,8508463-8508563,8509093-8509110
Length = 404
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 151 LPDALVLEAPF---NNLKDEIAKHPLSKLVS 234
+P A+++E P + KD IAK L+KLVS
Sbjct: 288 IPPAIIIEGPQLVQHGFKDAIAKVGLAKLVS 318
>04_04_0173 -
23294511-23294601,23294719-23294849,23295160-23295483,
23296016-23296147,23296225-23296373,23296536-23296670,
23296997-23297090,23297199-23297318,23298096-23298182,
23298273-23298386,23299089-23299270,23299960-23300023,
23300191-23300337,23300636-23300845,23301048-23301217,
23301355-23301477,23301589-23301661,23301765-23301857
Length = 812
Score = 25.8 bits (54), Expect = 7.6
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +1
Query: 70 RLGTAVAANFVSNLEELCQERGSEKLRLPDALVLEAPFNNLKDEIAKHP 216
R G AV ++ L EL Q+ G +A V A N +KD +AKHP
Sbjct: 68 RAGMAVNKRGLT-LRELLQQTGHY-----NANVRRAALNGIKDLVAKHP 110
>04_03_1013 -
21714804-21714896,21715202-21715241,21715629-21715691,
21716381-21716484,21717085-21717187,21717647-21717717,
21718830-21718925,21719174-21719305
Length = 233
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 43 RSIVDNFLIRLGTAVAANFVSNLEELCQERGSEKLRLPDAL 165
R++V+N + L A A E C RGS+ LR+ + L
Sbjct: 147 RNLVENDRVLLNPAHRAQQEYERTEKCSSRGSDVLRIANLL 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,436,262
Number of Sequences: 37544
Number of extensions: 162919
Number of successful extensions: 440
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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