Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19h23
         (320 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical ...    44   3e-05
AF024494-13|AAB70328.1|  398|Caenorhabditis elegans Nuclear horm...    27   2.3  
AC006610-6|AAK85452.1|  395|Caenorhabditis elegans Hypothetical ...    27   2.3  
Z70210-5|CAA94155.1|  312|Caenorhabditis elegans Hypothetical pr...    26   7.0  
U13876-16|AAW88394.1|  420|Caenorhabditis elegans Proteasome reg...    26   7.0  
U13876-15|AAA21173.2|  438|Caenorhabditis elegans Proteasome reg...    26   7.0  
Z80221-1|CAB02309.1|  690|Caenorhabditis elegans Hypothetical pr...    25   9.2  
Z72505-5|CAE11304.1|  333|Caenorhabditis elegans Hypothetical pr...    25   9.2  
U80024-4|AAK18888.1|  436|Caenorhabditis elegans Hypothetical pr...    25   9.2  

>AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical
           protein Y97E10AL.2 protein.
          Length = 345

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 22/59 (37%), Positives = 33/59 (55%)
 Frame = +1

Query: 73  LGTAVAANFVSNLEELCQERGSEKLRLPDALVLEAPFNNLKDEIAKHPLSKLVSWLPYF 249
           +GT V+   V +L        S + + P  L+LE+PFNNLKD +  HP+  + SW+  F
Sbjct: 192 MGTGVSCKLVQDL--------SREQQPPCGLILESPFNNLKDAVTNHPIFTVFSWMNDF 242


>AF024494-13|AAB70328.1|  398|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 260 protein.
          Length = 398

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 151 LPDALVLEAPFNNLKDEIAKHPLSKLVSWLPYF 249
           LPD +VLE  +    +E A     +    LPYF
Sbjct: 127 LPDVIVLEDQYETFLEEFASFQKKQFSEHLPYF 159


>AC006610-6|AAK85452.1|  395|Caenorhabditis elegans Hypothetical
           protein C30F12.6 protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 229 VSWLPYFKNTFVKPFTDSPDYSFTTDEYL 315
           V WLPY        F   P YS++ D Y+
Sbjct: 292 VCWLPYRGMVVYNSFVSDPKYSWSPDWYI 320


>Z70210-5|CAA94155.1|  312|Caenorhabditis elegans Hypothetical
           protein K08H2.5 protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +1

Query: 13  TCGRNLNIEFRSIVDNFLI--RLGTAVAANFVSNLEELCQERGSEK 144
           T G N    F ++VDNF++   LG  V      +L ++C+    +K
Sbjct: 76  TLGTNEKSRFPTLVDNFVVDSTLGCLVMTKEGDSLGDVCKRNDPKK 121


>U13876-16|AAW88394.1|  420|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 6, isoform b
           protein.
          Length = 420

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +1

Query: 37  EFRSIVDN---FLIRLGTAVAANFVSNLEELC 123
           E R++++    FL+ LG A AA  V +L +LC
Sbjct: 61  ELRNMIEQTRPFLVSLGKAKAAKLVRDLVDLC 92


>U13876-15|AAA21173.2|  438|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 6, isoform a
           protein.
          Length = 438

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +1

Query: 37  EFRSIVDN---FLIRLGTAVAANFVSNLEELC 123
           E R++++    FL+ LG A AA  V +L +LC
Sbjct: 79  ELRNMIEQTRPFLVSLGKAKAAKLVRDLVDLC 110


>Z80221-1|CAB02309.1|  690|Caenorhabditis elegans Hypothetical
           protein ZC247.2 protein.
          Length = 690

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 70  RLGTAVAANFVSNLEELCQERGSEKLRLPDA 162
           +L    A+++  NLE + +ER  E LRL  A
Sbjct: 584 KLAKKAASHYRGNLERVMEERMGENLRLKAA 614


>Z72505-5|CAE11304.1|  333|Caenorhabditis elegans Hypothetical
           protein C50C10.8 protein.
          Length = 333

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +1

Query: 166 VLEAPFNNLKDEIAKHPLSKLVSWLPYFKNTFVKPFT 276
           +L + +NN++ +I K  +  L+ ++P F  +F+ P T
Sbjct: 138 LLRSAYNNIRTKIMKWVVFPLLVFVPLFCVSFMVPST 174


>U80024-4|AAK18888.1|  436|Caenorhabditis elegans Hypothetical
           protein C18B10.6 protein.
          Length = 436

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 166 VLEAPFNNLKDEIA-KHPLS-KLVSWLPYFKNTFVKPFTDSPDYSFTTDEYLA 318
           ++EA + N+++ +   H  + K+ S LPY   + V  +TD   Y     +YLA
Sbjct: 73  LIEADWQNVEENLQLPHKFAVKISSQLPYIAFSKVLKYTDENGYEDEKLKYLA 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,152,760
Number of Sequences: 27780
Number of extensions: 134894
Number of successful extensions: 423
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)