Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19h22
(476 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 97 1e-21
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 93 3e-20
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 56 2e-09
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 56 4e-09
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 26 3.4
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 5.9
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 25 5.9
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 25 7.9
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 25 7.9
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 7.9
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 25 7.9
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po... 25 7.9
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 97.1 bits (231), Expect = 1e-21
Identities = 43/75 (57%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL----AFPDNDNSCGHFFSETGAGK 256
M+EI+ IH+GQAG Q NACWELYCLEHGI+P+G + A ++D FFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 257 FVPRVVMIDLEPTPI 301
+VPR + +DLEP I
Sbjct: 61 YVPRSIYVDLEPNVI 75
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 92.7 bits (220), Expect = 3e-20
Identities = 44/79 (55%), Positives = 54/79 (68%), Gaps = 8/79 (10%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGV-----LAFPDN---DNSCGHFFSET 244
M+E++ +H+GQAGVQ NACWELYCLEHGI PDG +N ++ G FFSET
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 245 GAGKFVPRVVMIDLEPTPI 301
G GKFVPR + +DLEP I
Sbjct: 61 GQGKFVPRSIYVDLEPNVI 79
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 56.4 bits (130), Expect = 2e-09
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Frame = +2
Query: 92 KEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL-AF-PDNDNSCGHFFSETGAGKFVP 265
+EI+ + GQ G Q + W+ CLEHGI PDG L +F + + FF ++ +++P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 266 RVVMIDLEP 292
R ++IDLEP
Sbjct: 63 RAILIDLEP 71
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 55.6 bits (128), Expect = 4e-09
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL--AFPDNDNSCGHFFSETGAGKFV 262
M+EI+HI GQ G Q A W EHG+ G+ +F+E GK+V
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 263 PRVVMIDLEP 292
PR V++DLEP
Sbjct: 61 PRAVLVDLEP 70
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 3.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 108 YTLDKPVCKPLTPVGNCIVLNT 173
Y LD + + +TP CIVLNT
Sbjct: 96 YNLDTAIKEVVTPGHTCIVLNT 117
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 128 HRLVQCVCVEFLSFSINHCKFW 63
H+++QC V FLSF I+ C W
Sbjct: 958 HQVLQCKDVSFLSF-ISDCLKW 978
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 5.9
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 154 FPTGVSGLHTGLSNVYV*NFFHFQLITVNFGFYHILFNLQSN 29
FP + L++G Y NFF L + G+YH L N SN
Sbjct: 249 FPKKIRLLYSGN---YQGNFFPLFLSILCVGYYHHLLNNPSN 287
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 24.6 bits (51), Expect = 7.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 291 GSKSIITTRGTNFPAPVSLKKCPQLLSLSGNARTP 187
G++ + TR N P P L+ L+ NAR P
Sbjct: 439 GTRDFLVTRLANKPTPTLDAFIDVLVQLTDNARVP 473
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 24.6 bits (51), Expect = 7.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 175 PVFKTIQFPTGVSGLHTGLSNVY 107
P+ I+F +G+ LHT L VY
Sbjct: 1018 PIIGGIEFSSGMGLLHTALLGVY 1040
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 24.6 bits (51), Expect = 7.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 300 MGVGSKSIITTRGTNFPAPVSLKKCPQLLSLSGNARTPSGLIPCS 166
+ +G + T + PV KK QL S ++ +PS +IP S
Sbjct: 410 VSLGKVPLFLTPIVRYKNPVKNKKRSQLTSRISSSVSPSNVIPNS 454
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 24.6 bits (51), Expect = 7.9
Identities = 12/44 (27%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -1
Query: 287 LNQSSQLEARIFQHRFH*K-NVHNYYHYQEMLELHPVLSRVQDN 159
L Q++ A I+ HRF+ + ++ NY++Y+ + ++V+D+
Sbjct: 60 LPQTALATANIYFHRFYLRFSLKNYHYYEVAATCIFLATKVEDS 103
>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 24.6 bits (51), Expect = 7.9
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -2
Query: 244 GFTKKMSTTIIIIRKC*NSIRSYPVFKTIQFPTGVSGLHTGLSNVY 107
GF ++ + RK S P + + +G+ G H GL NV+
Sbjct: 386 GFVERDDPVYVNTRKMILSSEGNPYYLKGKVISGIGGPHIGLRNVW 431
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,940,712
Number of Sequences: 5004
Number of extensions: 38467
Number of successful extensions: 88
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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