Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19h22
(476 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 106 9e-24
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 104 3e-23
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 104 4e-23
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 104 4e-23
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 104 4e-23
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 102 2e-22
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 99 8e-22
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 99 2e-21
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 99 2e-21
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 97 4e-21
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 97 4e-21
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 97 4e-21
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 97 4e-21
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 90 9e-19
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 79 2e-15
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 61 3e-10
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 61 5e-10
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 61 5e-10
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 60 6e-10
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 60 6e-10
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 56 1e-08
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 53 9e-08
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 53 9e-08
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 53 1e-07
Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical p... 48 3e-06
AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin... 48 3e-06
AF025453-12|AAK31405.1| 600|Caenorhabditis elegans Hypothetical... 27 7.0
U29377-3|AAA68720.2| 472|Caenorhabditis elegans Hypothetical pr... 27 9.2
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 27 9.2
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 27 9.2
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 27 9.2
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 106 bits (254), Expect = 9e-24
Identities = 47/76 (61%), Positives = 59/76 (77%), Gaps = 4/76 (5%)
Frame = +2
Query: 86 KMKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPD----NDNSCGHFFSETGAG 253
+ +E++ IH+GQAGVQ NACWELYCLEHGI+PDG++ D +D+S FFSET AG
Sbjct: 5 RSREVISIHVGQAGVQMGNACWELYCLEHGIQPDGMINEEDSLGVDDDSFNTFFSETMAG 64
Query: 254 KFVPRVVMIDLEPTPI 301
K VPR +M+DLEPTPI
Sbjct: 65 KHVPRAIMVDLEPTPI 80
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 104 bits (250), Expect = 3e-23
Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPD-NDNSCGHFFSETGAGKFVP 265
M+E++ IH+GQAGVQ NACWELYCLEHGI PDG PD N S G FFS+TG G+ VP
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGILPDGTSMEPDGNSGSLGTFFSDTGYGRHVP 60
Query: 266 RVVMIDLEPTPI 301
R + +DLEPT +
Sbjct: 61 RSIFVDLEPTVV 72
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 104 bits (249), Expect = 4e-23
Identities = 47/75 (62%), Positives = 58/75 (77%), Gaps = 4/75 (5%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL----AFPDNDNSCGHFFSETGAGK 256
M+E++ IHIGQAGVQ NACWELYCLEHGI+PDG + + +D+S FFSETG+G+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 257 FVPRVVMIDLEPTPI 301
VPR VM+DLEPT I
Sbjct: 61 HVPRAVMVDLEPTVI 75
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 104 bits (249), Expect = 4e-23
Identities = 47/75 (62%), Positives = 58/75 (77%), Gaps = 4/75 (5%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL----AFPDNDNSCGHFFSETGAGK 256
M+E++ IHIGQAGVQ NACWELYCLEHGI+PDG + + +D+S FFSETG+G+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 257 FVPRVVMIDLEPTPI 301
VPR VM+DLEPT I
Sbjct: 61 HVPRAVMVDLEPTVI 75
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 104 bits (249), Expect = 4e-23
Identities = 47/75 (62%), Positives = 58/75 (77%), Gaps = 4/75 (5%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL----AFPDNDNSCGHFFSETGAGK 256
M+E++ IHIGQAGVQ NACWELYCLEHGI+PDG + + +D+S FFSETG+G+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 257 FVPRVVMIDLEPTPI 301
VPR VM+DLEPT I
Sbjct: 61 HVPRAVMVDLEPTVI 75
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 102 bits (244), Expect = 2e-22
Identities = 46/74 (62%), Positives = 57/74 (77%), Gaps = 4/74 (5%)
Frame = +2
Query: 92 KEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL----AFPDNDNSCGHFFSETGAGKF 259
+E++ IHIGQAGVQ NACWELYCLEHGI+PDG + + +D+S FFSETG+G+
Sbjct: 1 REVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGRH 60
Query: 260 VPRVVMIDLEPTPI 301
VPR VM+DLEPT I
Sbjct: 61 VPRAVMVDLEPTVI 74
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 99 bits (238), Expect = 8e-22
Identities = 46/75 (61%), Positives = 55/75 (73%), Gaps = 4/75 (5%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL----AFPDNDNSCGHFFSETGAGK 256
M+EI+ IHIGQAGVQ NACWELYCLEHGI PDG++ ++ D S FFSET +GK
Sbjct: 1 MREIVSIHIGQAGVQIGNACWELYCLEHGITPDGLMPDDTSYGVEDQSYNTFFSETPSGK 60
Query: 257 FVPRVVMIDLEPTPI 301
VPR + +DLEPT I
Sbjct: 61 HVPRAIFVDLEPTVI 75
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 98.7 bits (235), Expect = 2e-21
Identities = 41/73 (56%), Positives = 55/73 (75%), Gaps = 2/73 (2%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPDND--NSCGHFFSETGAGKFV 262
M+E++ IH+GQAGVQ NACWELYCLEHGI+PDG + + S FFS+TG+G++V
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEGESFTTFFSDTGSGRYV 60
Query: 263 PRVVMIDLEPTPI 301
PR + +DLEPT +
Sbjct: 61 PRSIFVDLEPTVV 73
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 98.7 bits (235), Expect = 2e-21
Identities = 41/73 (56%), Positives = 55/73 (75%), Gaps = 2/73 (2%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPDND--NSCGHFFSETGAGKFV 262
M+E++ IH+GQAGVQ NACWELYCLEHGI+PDG + + S FFS+TG+G++V
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEGESFTTFFSDTGSGRYV 60
Query: 263 PRVVMIDLEPTPI 301
PR + +DLEPT +
Sbjct: 61 PRSIFVDLEPTVV 73
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 97.5 bits (232), Expect = 4e-21
Identities = 42/75 (56%), Positives = 56/75 (74%), Gaps = 4/75 (5%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPDNDNSCGH----FFSETGAGK 256
M+E++ IH+GQAGVQ NACWELYCLEHGI+PDG + P + + G FFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTM--PSDQQADGESFTTFFSDTGNGR 58
Query: 257 FVPRVVMIDLEPTPI 301
+VPR + +DLEPT +
Sbjct: 59 YVPRSIFVDLEPTVV 73
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 97.5 bits (232), Expect = 4e-21
Identities = 41/73 (56%), Positives = 54/73 (73%), Gaps = 2/73 (2%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPDND--NSCGHFFSETGAGKFV 262
M+E++ IH+GQAGVQ NACWELYCLEHGI+PDG + + S FFS+TG G++V
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGGSFTTFFSDTGNGRYV 60
Query: 263 PRVVMIDLEPTPI 301
PR + +DLEPT +
Sbjct: 61 PRSIFVDLEPTVV 73
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 97.5 bits (232), Expect = 4e-21
Identities = 42/75 (56%), Positives = 56/75 (74%), Gaps = 4/75 (5%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPDNDNSCGH----FFSETGAGK 256
M+E++ IH+GQAGVQ NACWELYCLEHGI+PDG + P + + G FFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTM--PSDQQADGESFTTFFSDTGNGR 58
Query: 257 FVPRVVMIDLEPTPI 301
+VPR + +DLEPT +
Sbjct: 59 YVPRSIFVDLEPTVV 73
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 97.5 bits (232), Expect = 4e-21
Identities = 41/73 (56%), Positives = 54/73 (73%), Gaps = 2/73 (2%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPDND--NSCGHFFSETGAGKFV 262
M+E++ IH+GQAGVQ NACWELYCLEHGI+PDG + + S FFS+TG G++V
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGGSFTTFFSDTGNGRYV 60
Query: 263 PRVVMIDLEPTPI 301
PR + +DLEPT +
Sbjct: 61 PRSIFVDLEPTVV 73
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 89.8 bits (213), Expect = 9e-19
Identities = 38/74 (51%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Frame = +2
Query: 92 KEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL----AFPDNDNSCGHFFSETGAGKF 259
+E++ IH+GQAGVQ NACWEL+CLEHGI+PDG + + + FF+ET GK
Sbjct: 8 REVISIHVGQAGVQIGNACWELFCLEHGIQPDGYHVEDDTYDEETETINTFFAETAGGKH 67
Query: 260 VPRVVMIDLEPTPI 301
VPR + +DLEPT +
Sbjct: 68 VPRCLFVDLEPTVV 81
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 79.0 bits (186), Expect = 2e-15
Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Frame = +2
Query: 92 KEILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPDND---NSCGHFFSETGAGKFV 262
+E + IHIGQAG Q NACWELYC+EHG+ G L + + S FFSE+ GK V
Sbjct: 6 RECVSIHIGQAGAQIGNACWELYCIEHGLDEAGFLKEEEKNKKQQSLQAFFSESMNGKHV 65
Query: 263 PRVVMIDLEPT 295
PR + +DLEPT
Sbjct: 66 PRAIYVDLEPT 76
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 61.3 bits (142), Expect = 3e-10
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPDND---NSCGHFFSETGAGKF 259
M+EI+H+ GQ G Q + WE+ EHGI+PDG ++D +++E GK+
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFK-GESDLQLERIDVYYNEANNGKY 59
Query: 260 VPRVVMIDLEP 292
VPR V++DLEP
Sbjct: 60 VPRAVLVDLEP 70
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 60.9 bits (141), Expect = 5e-10
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPDND---NSCGHFFSETGAGKF 259
M+EI+H+ GQ G Q WE+ EHGI+PDG ++D +++E GK+
Sbjct: 1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIQPDGTYK-GESDLQLERINVYYNEANGGKY 59
Query: 260 VPRVVMIDLEP 292
VPR V++DLEP
Sbjct: 60 VPRAVLVDLEP 70
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 60.9 bits (141), Expect = 5e-10
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPDND---NSCGHFFSETGAGKF 259
M+EI+H+ GQ G Q + WE+ EHGI+PDG + D +++E GK+
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFK-GETDLQLERIDVYYNEANNGKY 59
Query: 260 VPRVVMIDLEP 292
VPR V++DLEP
Sbjct: 60 VPRAVLVDLEP 70
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 60.5 bits (140), Expect = 6e-10
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPDND---NSCGHFFSETGAGKF 259
M+EI+HI GQ G Q + WE+ EHGI P G D+D +++E G+ K+
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYV-GDSDLQLERINVYYNEAGSNKY 59
Query: 260 VPRVVMIDLEP 292
VPR V++DLEP
Sbjct: 60 VPRAVLVDLEP 70
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 60.5 bits (140), Expect = 6e-10
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPDND---NSCGHFFSETGAGKF 259
M+EI+HI GQ G Q + WE+ EHGI P G D+D +++E G+ K+
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYV-GDSDLQLERINVYYNEAGSNKY 59
Query: 260 VPRVVMIDLEP 292
VPR V++DLEP
Sbjct: 60 VPRAVLVDLEP 70
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 56.4 bits (130), Expect = 1e-08
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPDND---NSCGHFFSETGAGKF 259
M+EI+HI GQ G Q WE+ EHGI P G D+D +++E GK+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGAYN-GDSDLQLERINVYYNEASGGKY 59
Query: 260 VPRVVMIDLEP 292
VPR ++DLEP
Sbjct: 60 VPRACLVDLEP 70
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 53.2 bits (122), Expect = 9e-08
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPDNDNSCGH---FFSETGAGKF 259
MKEI+++ +GQ G Q WE EHG++ DG DN + ++ E K+
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYK-GDNGSQLERITSYYKEMEGRKY 59
Query: 260 VPRVVMIDLEPTPI 301
VPR +++DL+P I
Sbjct: 60 VPRAILVDLDPESI 73
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 53.2 bits (122), Expect = 9e-08
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPDNDNSCGH---FFSETGAGKF 259
MKEI+++ +GQ G Q WE EHG++ DG DN + ++ E K+
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYK-GDNGSQLERITSYYKEMEGRKY 59
Query: 260 VPRVVMIDLEPTPI 301
VPR +++DL+P I
Sbjct: 60 VPRAILVDLDPESI 73
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 52.8 bits (121), Expect = 1e-07
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Frame = +2
Query: 155 LYCLEHGIRPDGVLA----FPDNDNSCGHFFSETGAGKFVPRVVMIDLEPTPI 301
++CLEHGI+PDG + + + FF+ET GK VPR + +DLEPT +
Sbjct: 1 MFCLEHGIQPDGYHVEDDTYDEETETINTFFAETAGGKHVPRCLFVDLEPTVV 53
>Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical
protein F58A4.8 protein.
Length = 444
Score = 48.4 bits (110), Expect = 3e-06
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +2
Query: 98 ILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPDNDNSCGH-FFSETGAGKFVPRVV 274
++ +H+GQ G Q A A W+ EHGI G D+ N F + +VPR V
Sbjct: 7 LMTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDMNDKKDLLFYQADDDHYVPRAV 66
Query: 275 MIDLEPTPI 301
++DLEP I
Sbjct: 67 LVDLEPRVI 75
>AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin
protein.
Length = 444
Score = 48.4 bits (110), Expect = 3e-06
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +2
Query: 98 ILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPDNDNSCGH-FFSETGAGKFVPRVV 274
++ +H+GQ G Q A A W+ EHGI G D+ N F + +VPR V
Sbjct: 7 LMTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDMNDKKDLLFYQADDDHYVPRAV 66
Query: 275 MIDLEPTPI 301
++DLEP I
Sbjct: 67 LVDLEPRVI 75
>AF025453-12|AAK31405.1| 600|Caenorhabditis elegans Hypothetical
protein C08F1.8 protein.
Length = 600
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -2
Query: 403 KLYKPCNVQAVVFFSSTKSTYSSQELIILFFKLTD 299
+L + C+ +TK+TYS + + +FF +T+
Sbjct: 473 QLSETCSPMNYTLLKTTKATYSQKMFMAIFFAITE 507
>U29377-3|AAA68720.2| 472|Caenorhabditis elegans Hypothetical
protein K05F1.5 protein.
Length = 472
Score = 26.6 bits (56), Expect = 9.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 203 PDNDNSCGHFFSETGAGKFVPRV 271
PD D SCG++ +E +G+ + V
Sbjct: 177 PDTDGSCGNYHTERTSGEIIDGV 199
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 131 QAANACWELYCLEHGIRPDGVLAFPDNDNSCGHFFSETG 247
Q +C CL +G++P GV N + FF+++G
Sbjct: 63 QICRSCRHKKCLSNGMKPGGVQPKKPNIETGRAFFTKSG 101
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 131 QAANACWELYCLEHGIRPDGVLAFPDNDNSCGHFFSETG 247
Q +C CL +G++P GV N + FF+++G
Sbjct: 81 QICRSCRHKKCLSNGMKPGGVQPKKPNIETGRAFFTKSG 119
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 131 QAANACWELYCLEHGIRPDGVLAFPDNDNSCGHFFSETG 247
Q +C CL +G++P GV N + FF+++G
Sbjct: 63 QICRSCRHKKCLSNGMKPGGVQPKKPNIETGRAFFTKSG 101
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,853,611
Number of Sequences: 27780
Number of extensions: 217009
Number of successful extensions: 527
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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