Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19h19
(571 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 106 3e-24
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 106 3e-24
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 33 0.029
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 5.9
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox... 25 7.8
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 25 7.8
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 7.8
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 25 7.8
>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 106 bits (254), Expect = 3e-24
Identities = 48/84 (57%), Positives = 65/84 (77%)
Frame = +1
Query: 49 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGXEKFSMV 228
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 229 DIRVTVKGGGHVAQVYAITTSYFK 300
DIRV V GGGHV+Q+YAI + K
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISK 84
Score = 97.9 bits (233), Expect = 9e-22
Identities = 45/61 (73%), Positives = 52/61 (85%)
Frame = +2
Query: 287 QAISKALIAFYQKYVDEASKKEIXDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSY 466
QAISKA++A+YQK+VDE SK E+ L+ YDR+LLVADPRR EPKKFGG GARAR QKSY
Sbjct: 80 QAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSY 139
Query: 467 R 469
R
Sbjct: 140 R 140
>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 140
Score = 106 bits (254), Expect = 3e-24
Identities = 48/84 (57%), Positives = 65/84 (77%)
Frame = +1
Query: 49 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGXEKFSMV 228
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 229 DIRVTVKGGGHVAQVYAITTSYFK 300
DIRV V GGGHV+Q+YAI + K
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISK 84
Score = 97.9 bits (233), Expect = 9e-22
Identities = 45/61 (73%), Positives = 52/61 (85%)
Frame = +2
Query: 287 QAISKALIAFYQKYVDEASKKEIXDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSY 466
QAISKA++A+YQK+VDE SK E+ L+ YDR+LLVADPRR EPKKFGG GARAR QKSY
Sbjct: 80 QAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSY 139
Query: 467 R 469
R
Sbjct: 140 R 140
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 33.1 bits (72), Expect = 0.029
Identities = 21/77 (27%), Positives = 34/77 (44%)
Frame = +1
Query: 70 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGXEKFSMVDIRVTVK 249
G++K++ A G G VNG P D+ R++ K L + + ++ TV
Sbjct: 12 GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70
Query: 250 GGGHVAQVYAITTSYFK 300
GGG Q A+ + K
Sbjct: 71 GGGPTGQSGAVHAAISK 87
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.4 bits (53), Expect = 5.9
Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 3/105 (2%)
Frame = +2
Query: 188 NLSFCSARKNSLWLTSE*QSRVVVM*HKFTLSXQAISKALIAFYQKYVDEASKKEIXDIL 367
NL A + LT +R+ + + + +I Q Y+D +++ +
Sbjct: 1689 NLPMVDAHVKAFILTQAHMARLKLPVDDYVTDTSTVLDQVIRIIQSYIDVSAELGYSHVC 1748
Query: 368 VQYDRSLLVADPRRCEPKKF---GGPGARARYQKSYR*AFKKTIG 493
+QY SL+ + C P + PG A +K R K G
Sbjct: 1749 LQY-ISLMQCLKQACYPSEIYRASLPGLNASSEKEARDYLNKFAG 1792
>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
Etp1/ cytochrome oxidase cofactor Cox15,
fusion|Schizosaccharomyces pombe|chr 1|||Manual
Length = 631
Score = 25.0 bits (52), Expect = 7.8
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 5 SLSKWLLCRRQDVSPSRPSKYSDVRKPPP 91
S+S +L +++ RPS +S+++KP P
Sbjct: 487 SISSSILTQQRQFHTFRPSFHSEIKKPLP 515
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +2
Query: 242 QSRVVVM*HKFTLSXQAISKALIAFYQKYVDEASKKEIXDILVQY 376
+ R ++ +FTL+ L F+ +DE ++KE+ + Y
Sbjct: 150 KDRTYLVGDRFTLADLFFGSLLRIFFNSIIDEKTRKELPHLTRYY 194
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.0 bits (52), Expect = 7.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 136 RLHAAFHDHACNTQLRWRFS 77
RLH+ F++H C + L+ FS
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFS 1081
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 7.8
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 450 DTRNLTVKPSRKPSGGIVAASCCHCDIIGWCTIKNXXSYG 569
D N+ VKP+ P+ + CCH I + T ++G
Sbjct: 566 DRFNVIVKPALNPAERMTVRICCHDCINEYFTAGPGFTFG 605
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,413,416
Number of Sequences: 5004
Number of extensions: 46358
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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