Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19h19
(571 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 112 2e-25
11_01_0155 - 1287003-1287452 112 2e-25
03_06_0097 - 31632238-31632525,31633386-31633769 34 0.092
07_03_0227 - 15398371-15398925 30 1.1
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 30 1.5
12_02_1026 - 25478462-25479232,25479249-25479821 29 2.0
03_01_0365 - 2839190-2839251,2839637-2839694,2839946-2840032,284... 29 3.4
11_06_0598 - 25391923-25393197 28 4.6
12_01_0145 + 1106432-1106674,1106941-1107069,1107312-1107368,110... 28 6.0
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849... 28 6.0
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 6.0
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533... 27 8.0
>12_01_0152 - 1168928-1169377
Length = 149
Score = 112 bits (270), Expect = 2e-25
Identities = 50/61 (81%), Positives = 57/61 (93%)
Frame = +2
Query: 287 QAISKALIAFYQKYVDEASKKEIXDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSY 466
QAI+KAL+A+YQKYVDEASKKE+ DI +YDR+LLVADPRRCEPKKFGG GARAR+QKSY
Sbjct: 89 QAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSY 148
Query: 467 R 469
R
Sbjct: 149 R 149
Score = 100 bits (240), Expect = 7e-22
Identities = 48/116 (41%), Positives = 73/116 (62%), Gaps = 4/116 (3%)
Frame = +1
Query: 40 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGXEKF 219
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 220 SMVDIRVTVKGGGHVAQVYAITTSYFKG----SDRLLPEICRRSLKEGNXRHPSTI 375
+D+R+ V+GGG +Q+YAI + K + + E ++ +K+ R+ T+
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTL 122
>11_01_0155 - 1287003-1287452
Length = 149
Score = 112 bits (270), Expect = 2e-25
Identities = 50/61 (81%), Positives = 57/61 (93%)
Frame = +2
Query: 287 QAISKALIAFYQKYVDEASKKEIXDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSY 466
QAI+KAL+A+YQKYVDEASKKE+ DI +YDR+LLVADPRRCEPKKFGG GARAR+QKSY
Sbjct: 89 QAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSY 148
Query: 467 R 469
R
Sbjct: 149 R 149
Score = 100 bits (240), Expect = 7e-22
Identities = 48/116 (41%), Positives = 73/116 (62%), Gaps = 4/116 (3%)
Frame = +1
Query: 40 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGXEKF 219
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 220 SMVDIRVTVKGGGHVAQVYAITTSYFKG----SDRLLPEICRRSLKEGNXRHPSTI 375
+D+R+ V+GGG +Q+YAI + K + + E ++ +K+ R+ T+
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTL 122
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 33.9 bits (74), Expect = 0.092
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +1
Query: 52 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLV---EPRLLQYKLQEPILLLGXEKFS 222
Q + GR+KTA A + G G + +N R P ++Y + P++ LG E +
Sbjct: 96 QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152
Query: 223 MVDIRVTVKGGGHVAQVYAI 282
D+ V V GGG Q AI
Sbjct: 153 SYDVFVKVHGGGLSGQAQAI 172
>07_03_0227 - 15398371-15398925
Length = 184
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -1
Query: 190 VPEVCTAAVWAQPSPMGARLHAAFH--DHACNTQLRWRF 80
+P +C A W P+ A H FH C+ + RW +
Sbjct: 23 LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +1
Query: 70 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGXEKFSMVDIRVTVK 249
G++K + A + + G G VN + D P +L ++ + D+ TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353
Query: 250 GGGHVAQVYAI 282
GGG QV AI
Sbjct: 354 GGGVSGQVGAI 364
>12_02_1026 - 25478462-25479232,25479249-25479821
Length = 447
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/74 (31%), Positives = 33/74 (44%)
Frame = +1
Query: 157 EPRLLQYKLQEPILLLGXEKFSMVDIRVTVKGGGHVAQVYAITTSYFKGSDRLLPEICRR 336
EP L +Y+L +LG F+ V + V GG VA V I + G+ + P + R
Sbjct: 17 EPLLGKYELGR---MLGRGTFAKVYLARAVAGGEAVA-VKVIDKAEVMGTAGMAPRVLRE 72
Query: 337 SLKEGNXRHPSTIR 378
RHP +R
Sbjct: 73 VAAMRRLRHPHVLR 86
>03_01_0365 -
2839190-2839251,2839637-2839694,2839946-2840032,
2840117-2840206,2840575-2840650,2840877-2840971,
2841090-2841173,2841270-2841343,2841803-2841827
Length = 216
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 211 EKFSMVDIRVTVKGGGHVAQVYAITTSYFKGSDRLLPEICRR 336
EK +MV I + K ++ QV+ +T +R +PE+ RR
Sbjct: 155 EKNNMVFIETSAKTADNINQVFEVTVFALLIKNRKIPELVRR 196
>11_06_0598 - 25391923-25393197
Length = 424
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -2
Query: 450 LARAPGPPNFLGSQRRGSATSKLLSYCTRMSXISFFEASSTYFW*KAIRAF 298
LA PP L S TS L + T + ++ S+TY AIR F
Sbjct: 254 LATLVSPPKLLQSLNISGITSGLPDWITELDQLTKITLSNTYLGEDAIRVF 304
>12_01_0145 +
1106432-1106674,1106941-1107069,1107312-1107368,
1107501-1107799,1108078-1108169,1108314-1108528,
1108797-1108923,1109080-1109216
Length = 432
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 250 GGGHVAQ--VYAITTSYFKGSDRLLPEICRRSLKEGNXRHPS 369
GGG Q +Y + Y+ S + ++C+ S+KE +P+
Sbjct: 324 GGGGAGQDDLYVASAFYYIASHAVAEKVCKLSVKEAKVEYPN 365
>08_02_0526 +
18184146-18184168,18184247-18184438,18184846-18184954,
18185071-18185220,18185973-18186136,18186273-18186359,
18187083-18187137,18187911-18188333
Length = 400
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 32 RQDVSPSRPSKYSDVRKPPPQLRIAS 109
R+ S S P K SD R PPP+ R S
Sbjct: 33 RRSTSRSPPPKKSDSRSPPPRRRSTS 58
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 133 NGRPLDLVEPRLLQYKLQEPILLL 204
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
>01_05_0500 +
22752190-22752329,22752957-22753032,22753292-22753351,
22754718-22754882,22756299-22756358
Length = 166
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 144 WAPVYTQHSMTTLAIRNCGGGFLTSEYLD 58
W V T H +T +A R+C G F ++LD
Sbjct: 18 WNYVVTAHKLTVVA-RSCVGNFTAPDHLD 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,295,046
Number of Sequences: 37544
Number of extensions: 367272
Number of successful extensions: 1017
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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