Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19h19
         (571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.8  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   6.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   6.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   8.6  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 264  YMTTTLDCHSDVNHREFFLAEQKD 193
            ++TTT+DC +   + E  + +QK+
Sbjct: 958  HITTTIDCSTQSEYYELEVKDQKN 981


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -2

Query: 81  FLTSEYLDGLDGLT 40
           F++S +L+GL+GLT
Sbjct: 391 FVSSPFLNGLEGLT 404


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -2

Query: 567 HNXXYFLLYTTQ*YRNDNTTPRRYHPMV 484
           HN  Y   Y    Y N+N   + Y+ ++
Sbjct: 90  HNNNYKYNYNNNNYNNNNYNKKLYYNII 117


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -2

Query: 567 HNXXYFLLYTTQ*YRNDNTTPRRYHPMV 484
           HN  Y   Y    Y N+N   + Y+ ++
Sbjct: 90  HNNNYKYNYNNNNYNNNNYNKKLYYNII 117


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -2

Query: 153  QVQWAPVYTQHSMTTLAIRNCGGGFLTSE 67
            Q+     YTQ+S+   A    G G ++ E
Sbjct: 1043 QIMNLKTYTQYSVVVQAFNKVGSGPMSEE 1071


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 501 VAASCCHCDIIGWCTIKNXXSYG 569
           + ASCC+      C+I N  + G
Sbjct: 159 IPASCCNSPENNTCSISNSYTNG 181


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,150
Number of Sequences: 438
Number of extensions: 3669
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)